Keywords protein
_4dn.biosource 4D Nucleome Data Portal Biosource
aaindex AAindex
amoebadb AmoebaDB
antibodyregistry Antibody Registry
apd Antimicrobial Peptide Database
arachnoserver ArachnoServer
araport Arabidopsis Information Portal
archdb ArchDB
arrayexpress ArrayExpress
bactibase Bactibase
bao BioAssay Ontology
beetlebase Tribolium Genome Database -- Insertion
bindingdb BindingDB
biocyc BioCyc collection of metabolic pathway databases
biogrid BioGRID
biomagresbank BioMagResBank
biosystems BioSystems
bmrb.entry Biological Magnetic Resonance Data Bank
cath CATH Protein Structural Domain Superfamily
ccds Consensus CDS
cdd Conserved Domain Database at NCBI
cgd Candida Genome Database
chembl ChEMBL
chembl.target ChEMBL target
cog.cluster Cluster of orthologous genes
cohesindb.binding CohesinDB - cohesin site
cohesindb.loops CohesinDB - cohesin-related chromatin loop
come The Bioinorganic Motif Database
complexportal Complex Portal
compulyeast Compluyeast-2D-DB
corum Comprehensive Resource of Mammalian protein complexes
dbamp Database of Anti-Microbial Peptides
dbmhc Database of human Major Histocompatibility Complex
dictybase dictyBase
dip Database of Interacting Proteins
disprot DisProt
drugbank DrugBank
dto Drug Target Ontology
ec Enzyme Nomenclature
ecocyc EcoCyc
ecogene Database of Escherichia coli Sequence and Function
emdb Electron Microscopy Data Bank
eropmoscow Endogenous Regulatory OligoPeptide knowledgebase-Moscow
esldb eukaryotic Subcellular Localization database
facebase FaceBase Data Repository
flybase FlyBase Gene
flybrain.ndb FlyBrain Neuron Database
flymine.chromosome FlyMine Chromosome Band
fsnp F-SNP
genatlas Genatlas
genecards.gene GeneCards Gene
genedb GeneDB
genetree GeneTree
genewiki Gene Wiki
glycoepitope GlycoEpitope
glytoucan GlyTouCan
go Gene Ontology
goa Gene Ontology Annotation Database
gpcrdb G protein-coupled receptor database
gpcrnava GPCR Natural Variants database
hamap High-quality Automated and Manual Annotation of microbial Proteomes
hbvar A Database of Human Hemoglobin Variants and Thalassemias
hgnc HUGO Gene Nomenclature Committee
hmdb Human Metabolome Database
hogenom Database of Complete Genome Homologous Genes Families
homologene HomoloGene
hovergen Homologous Vertebrate Genes Database
hpa Human Protein Atlas tissue profile information
hprd Human Protein Reference Database
hssp Database of homology-derived secondary structure of proteins
huge Human Unidentified Gene-Encoded
ideal Intrinsically Disordered proteins with Extensive Annotations and Literature
iedb.assay Immune Epitope Database Assays
iedb.epitope Immune Epitope Database Epitopes
imgt.hla IMGT/HLA human major histocompatibility complex sequence database
imotdb Database of Spatially Interacting Motifs in Proteins
imr Molecule role (INOH Protein name/family name ontology)
innatedb A Knowledge Resource for Innate Immunity Interactions and Pathways
intact IntAct protein interaction
interpro InterPro
ipi International Protein Index
ird.segment IRD Segment Sequence
irefweb iRefWeb
iresite Database of experimentally verified IRES structures
ised Influenza Sequence and Epitope Database
kegg KEGG ID
kegg.compound KEGG Compound
kegg.genes KEGG gene
kegg.glycan KEGG Glycan
kegg.rclass KEGG Reaction Class
kegg.reaction KEGG Reaction
lgic Ligand-Gated Ion Channel database
ligandbox LigandBox
ligandexpo Ligand Expo
lrg Locus Reference Genomic
maizegdb.locus MaizeGDB Locus
matrixdb MatrixDB
merops.entry MEROPS Entry
metacyc.compound Metabolic Encyclopedia of metabolic and other pathways
metnetdb Metabolic Network Exchange Database
mge Aclame
mi Molecular Interactions Controlled Vocabulary
mimodb MimoDB
mint Molecular Interaction Database
mipmod MIPModDB
mmdb Molecular Modeling Database
mobidb MobiDB
mod Protein modification
molmovdb Database of Macromolecular Movements
mpid Microbial Protein Interaction Database
myco.tuber TubercuList knowledge base
ncbiprotein NCBI Protein
ncbitaxon NCBI Taxonomy
nembase Nematode & Neglected Genomics
nextprot nextProt
norine Nonribosomal Peptides Database
nucleardb NucleaRDB
oma.protein OMA Protein
omit Ontology for MicroRNA Target
ordb Olfactory Receptor Database
orth Orthology Ontology
orthodb OrthoDB
p3db.protein P3DB Protein
pandit Protein and Associated NucleotideDomains with Inferred Trees
panther.family PANTHER Family
pass2 Protein Alignment organised as Structural Superfamily
pathbank PathBank
pathguide Pathguide
pathoplant PathoPlant®
pazar Pazar Transcription Factor
pdb PDB Structure
pdb.ligand PDB ligand
pdbsum PDBsum; at-a-glance overview of macromolecular structures
pepbank PepBank Peptide Database
peptideatlas.peptide PeptideAtlas Peptide
peroxibase Peroxibase
pfam Pfam protein family
phylomedb PhylomeDB
pibase Database of structurally defined protein interfaces
pid.pathway NCI Pathway Interaction Database: Pathway
pirsf PIR Superfamily Classification System
planttfdb Plant Transcription Factor Database
pmap.cutdb CutDB
pmap.substratedb SubstrateDB
pmdb Protein Model Database
pmp Protein Model Portal
polbase PolBase
pr Protein Ontology
pride Proteomics Identification Database Ontology
prints PRINTS compendium of protein fingerprints
prodom ProDom
prosite PROSITE
protclustdb ProtClustDB
protcom Database of protein-protein complexes
protonet.cluster ProtoNet Cluster
protonet.proteincard ProtoNet ProteinCard
pscdb Protein Structural Change Database
pubchem.compound PubChem compound
pubchem.substance PubChem Substance ID (SID)
reactome Reactome
rebase REBASE Enzyme Number
receptome.family Human Plasma Membrane Receptome Families
refseq Reference Sequence Collection
resid Protein covalent bond
rhea Rhea reaction
rouge Rodent Unidentified Gene-Encoded Large Proteins
s_mart_db The S/MAR transaction DataBase
scop Structural Classification of Proteins - Unique Identifier
sdap Structural Database of Allergenic Proteins
sep Sample processing and separation techniques
sgd Saccharomyces Genome Database
signaling-gateway Signaling Gateway
signor Signaling Network Open Resource
slm SwissLipid
smart Simple Modular Architecture Research Tool
smpdb Small Molecule Pathway Database
soybase SoyBase
sstoss Sequence-Structural Templates of Single-member Superfamilies
stitch Search Tool for Interactions of Chemicals
string Search Tool for Retrieval of Interacting Genes/Proteins
subtilist Bacillus subtilis genome sequencing project
subtiwiki SubtiWiki
supfam SUPERFAMILY
swiss-model SWISS-MODEL Repository
t3db Toxin and Toxin Target Database
tair.protein TAIR Protein
tccd The Cell Cycle DB
tcdb Transporter Classification Database
tigrfam TIGR protein families
topdb Topology Data Bank of Transmembrane Proteins
transportdb TransportDB
unigene UniGene
uniparc UniProt Archive
uniprot UniProt Protein
uniprot.isoform UniProt Isoform
uniprot.mnemonic UniProt
uniref UniRef
unists Database of Sequence Tagged Sites
validatordb ValidatorDB
vario Variation Ontology
vbase2 Integrative database of germ-line V genes from the immunoglobulin loci of human and mouse
vectorbase Bioinformatics Resource Center for Invertebrate Vectors of Human Pathogens
vgnc Vertebrate Gene Nomenclature Committee
viperdb VIPERdb
wikipathways WikiPathways
world2dpage The World-2DPAGE database
wormbase WormBase
wormpep Wormpep
ydpm Yeast Deletion and the Mitochondrial Proteomics Project
yrcpdr YRC PDR
zfin Zebrafish Information Network Gene