Registry Zebrafish Information Network Gene

ZFIN serves as the zebrafish model organism database. This collection references all zebrafish biological entities in ZFIN.

Alternative Prefixes
animal physiology developmental biology gene genetics genome genomics zebrafish
Homepage @zfinmod
Doug Howe   0000-0001-5831-7439
Pattern for Local Unique Identifiers

Local identifiers in Zebrafish Information Network Gene should match this regular expression:

Example Local Unique Identifier
ZDB-GENE-041118-11   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Zebrafish Information Network Gene should match this regular expression:

Example CURIE
Metaregistry Zebrafish Information Network Gene

The metaregistry provides mappings between the Bioregistry and other registries. There are 10 mappings to external registries for zfin with 5 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext ZFIN
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.ybxnhg
GO Gene Ontology Registry logo go ZFIN logo miriam zfin
N2T Name-to-Thing logo n2t zfin
NCBI National Center for Biotechnology Information Registry logo ncbi ZFIN
Prefix Commons Prefix Commons logo prefixcommons zfin
re3data Registry of Research Data Repositories logo re3data r3d100010421
UniProt UniProt Cross-ref database logo uniprot DB-0113
Wikidata Wikidata Property logo wikidata P3870

Providers are various services that resolve CURIEs to URLs. The example CURIE zfin:ZDB-GENE-041118-11 is used to demonstrate the provides available for zfin. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Zebrafish Information Network Gene zfin
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
agr ZFIN through the Alliance of Genome Resources
bio2rdf Bio2RDF