ZFIN serves as the zebrafish model organism database. This collection references all zebrafish biological entities in ZFIN.

Prefix

zfin

Alternative Prefixes

ZFIN

Keywords

adult animal physiology antibody cdna developmental biology embryo expressed sequence tag fish gene genetics genome genomics pathology research zebrafish zebrafish line

License

CC-BY-4.0

Links

Homepage

Contact

Doug Howe   0000-0001-5831-7439

Pattern for Local Unique Identifiers

Local identifiers in Zebrafish Information Network Gene should match this regular expression:
^ZDB\-\w+\-\d+\-\d+$

Example Local Unique Identifier

ZDB-GENE-041118-11   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Zebrafish Information Network Gene should match this regular expression:
^zfin:ZDB\-\w+\-\d+\-\d+$

Example CURIE

zfin:ZDB-GENE-041118-11

Publications

• 2019 The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources
• ZFIN, the Zebrafish Model Organism Database: increased support for mutants and transgenics
• Data extraction, transformation, and dissemination through ZFIN
• ZFIN: enhancements and updates to the Zebrafish Model Organism Database
• Exploring zebrafish genomic, functional and phenotypic data using ZFIN
• 2007 The Zebrafish Information Network: the zebrafish model organism database provides expanded support for genotypes and phenotypes
• The Zebrafish Information Network: the zebrafish model organism database
• The Zebrafish Information Network (ZFIN): the zebrafish model organism database
• Zebrafish in the Net
• Data extraction, transformation, and dissemination through ZFIN.

A summary of the relations in the Bioregistry schema can be found here.

In Collection

Global Biodata Coalition - Global Core Biodata Resources

The metaregistry provides mappings between the Bioregistry and other registries. There are 12 mappings to external registries for this resource with 7 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier ZDB-GENE-041118-11 is used to demonstrate the providers available for Zebrafish Information Network Gene. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.