ZFIN serves as the zebrafish model organism database. This collection references all zebrafish biological entities in ZFIN.

Prefix

zfin

Alternative Prefixes

ZFIN

Keywords

animal physiology developmental biology gene genetics genome genomics zebrafish

Links

Homepage @zfinmod

Contact

Doug Howe   0000-0001-5831-7439

Pattern for Local Unique Identifiers

Local identifiers in Zebrafish Information Network Gene should match this regular expression:
^ZDB\-\w+\-\d+\-\d+$

Example Local Unique Identifier

ZDB-GENE-041118-11   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Zebrafish Information Network Gene should match this regular expression:
^zfin:ZDB\-\w+\-\d+\-\d+$

Example CURIE

zfin:ZDB-GENE-041118-11

Publications

• 2019 The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources
• ZFIN, the Zebrafish Model Organism Database: increased support for mutants and transgenics.
• Data extraction, transformation, and dissemination through ZFIN.
• ZFIN: enhancements and updates to the Zebrafish Model Organism Database.
• Exploring zebrafish genomic, functional and phenotypic data using ZFIN.
• 2007 The Zebrafish Information Network: the zebrafish model organism database provides expanded support for genotypes and phenotypes.
• The Zebrafish Information Network: the zebrafish model organism database.
• The Zebrafish Information Network (ZFIN): the zebrafish model organism database.
• Zebrafish in the Net.

The metaregistry provides mappings between the Bioregistry and other registries. There are 10 mappings to external registries for zfin with 5 unique external prefixes.

Providers are various services that resolve CURIEs to URLs. The example CURIE zfin:ZDB-GENE-041118-11 is used to demonstrate the provides available for zfin. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Additional providers curated in the Bioregistry are listed here.