Genetree displays the maximum likelihood phylogenetic (protein) trees representing the evolutionary history of the genes. These are constructed using the canonical protein for every gene in Ensembl.

classification gene protein
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in GeneTree should match this regular expression:

Example Local Unique Identifier
ENSGT00550000074763   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from GeneTree should match this regular expression:

Example CURIE
Metaregistry GeneTree

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext GENETREE logo miriam genetree
N2T Name-to-Thing logo n2t genetree
Prefix Commons Prefix Commons logo prefixcommons genetree
UniProt UniProt Cross-ref database logo uniprot DB-0162

Providers are various services that resolve CURIEs to URLs. The example CURIE genetree:ENSGT00550000074763 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
GeneTree genetree;gt=ENSGT00550000074763
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
bio2rdf Bio2RDF