Genetree displays the maximum likelihood phylogenetic (protein) trees representing the evolutionary history of the genes. These are constructed using the canonical protein for every gene in Ensembl.

classification gene protein
Paul Flicek   0000-0002-3897-7955
Pattern for Local Unique Identifiers

Local identifiers in GeneTree should match this regular expression:

Example Local Unique Identifier
ENSGT00550000074763   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from GeneTree should match this regular expression:

Example CURIE
Metaregistry GeneTree

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext GENETREE logo miriam genetree
N2T Name-to-Thing logo n2t genetree
Prefix Commons Prefix Commons logo prefixcommons genetree
UniProt UniProt Cross-ref database logo uniprot DB-0162

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier ENSGT00550000074763 is used to demonstrate the providers available for GeneTree. A guide for curating additional providers can be found here.

Name Metaprefix URI
GeneTree genetree;gt=ENSGT00550000074763
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF