Genetree displays the maximum likelihood phylogenetic (protein) trees representing the evolutionary history of the genes. These are constructed using the canonical protein for every gene in Ensembl.
- Prefix
genetree- Keywords
- classification gene protein
- Links
- Homepage
- Contact
- Paul Flicek 0000-0002-3897-7955
- Pattern for Local Unique Identifiers
-
Local identifiers in GeneTree should match this regular expression:
^ENSGT\d+$ - Example Local Unique Identifier
- ENSGT00550000074763 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from GeneTree should match this regular expression:
^genetree:ENSGT\d+$ - Example CURIE
- genetree:ENSGT00550000074763
- Publications
Metaregistry GeneTree
The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 2 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
GENETREE
|
|
Identifiers.org
|
miriam |
genetree
|
|
N2T
|
n2t |
genetree
|
|
Prefix Commons
|
prefixcommons |
genetree
|
|
UniProt
|
uniprot |
DB-0162
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier ENSGT00550000074763 is used to demonstrate the providers
available for GeneTree. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Code | Name | URL |
|---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/genetree:ENSGT00550000074763 |