PhylomeDB is a database of complete phylomes derived for different genomes within a specific taxonomic range. It provides alignments, phylogentic trees and tree-based orthology predictions for all encoded proteins.

Prefix
phylomedb
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in PhylomeDB should match this regular expression:
^\w+$

Example Local Unique Identifier
Phy000CLXM_RAT   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from PhylomeDB should match this regular expression:
^phylomedb:\w+$

Example CURIE
phylomedb:Phy000CLXM_RAT
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for phylomedb.

Registry Name Metaprefix External Prefix
Identifiers.org miriam phylomedb
Name-to-Thing n2t phylomedb
Prefix Commons prefixcommons PHYLOMEDB
UniProt Cross-ref database uniprot PhylomeDB
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE phylomedb:Phy000CLXM_RAT is used to demonstrate the provides available for phylomedb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
PhylomeDB phylomedb http://phylomedb.org/?seqid=Phy000CLXM_RAT
Bioregistry bioregistry https://bioregistry.io/phylomedb:Phy000CLXM_RAT
Identifiers.org miriam https://identifiers.org/phylomedb:Phy000CLXM_RAT
Name-to-Thing n2t https://n2t.net/phylomedb:Phy000CLXM_RAT