Registry PhylomeDB
PhylomeDB is a database of complete phylomes derived for different genomes within a specific taxonomic range. It provides alignments, phylogentic trees and tree-based orthology predictions for all encoded proteins.
- Prefix
phylomedb- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in PhylomeDB should match this regular expression:
^\w+$ - Example Local Unique Identifier
- Phy000CLXM_RAT Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from PhylomeDB should match this regular expression:
^phylomedb:\w+$ - Example CURIE
- phylomedb:Phy000CLXM_RAT
- References
-
- Publication https://bioregistry.io/pubmed:17962297
Metaregistry PhylomeDB
The metaregistry provides mappings between the Bioregistry and other registries. There are
6 mappings to external registries for phylomedb with
2 unique external prefixes.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
| BioContext | biocontext |
PHYLOMEDB
|
FAIRSharing
|
fairsharing |
FAIRsharing.7hxxc4
|
Identifiers.org
|
miriam |
phylomedb
|
Name-to-Thing
|
n2t |
phylomedb
|
| Prefix Commons | prefixcommons |
phylomedb
|
| UniProt Cross-ref database | uniprot |
PhylomeDB
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
phylomedb:
is used to demonstrate the provides available for
phylomedb. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| PhylomeDB | phylomedb |
http://phylomedb.org/?seqid=Phy000CLXM_RAT |
| Bioregistry | bioregistry |
https://bioregistry.io/phylomedb:Phy000CLXM_RAT |
| Identifiers.org | miriam |
https://identifiers.org/phylomedb:Phy000CLXM_RAT |
| Name-to-Thing | n2t |
https://n2t.net/phylomedb:Phy000CLXM_RAT |