PhylomeDB is a database of complete phylomes derived for different genomes within a specific taxonomic range. It provides alignments, phylogentic trees and tree-based orthology predictions for all encoded proteins.
phylomedb
Local identifiers in PhylomeDB should match this
regular expression:
^\w+$
Compact URIs (CURIEs) constructed from PhylomeDB should match
this regular expression:
^phylomedb:\w+$
The metaregistry provides mappings between the Bioregistry and other registries. There are
6 mappings to external registries for phylomedb
with
2 unique external prefixes.
Registry Name | Metaprefix | External Prefix |
---|---|---|
BioContext | biocontext |
PHYLOMEDB
|
FAIRSharing
|
fairsharing |
FAIRsharing.7hxxc4
|
Identifiers.org
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miriam |
phylomedb
|
Name-to-Thing
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n2t |
phylomedb
|
Prefix Commons | prefixcommons |
phylomedb
|
UniProt Cross-ref database | uniprot |
PhylomeDB
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
phylomedb:
is used to demonstrate the provides available for
phylomedb
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
PhylomeDB | phylomedb |
http://phylomedb.org/?seqid=Phy000CLXM_RAT |
Bioregistry | bioregistry |
https://bioregistry.io/phylomedb:Phy000CLXM_RAT |
Identifiers.org | miriam |
https://identifiers.org/phylomedb:Phy000CLXM_RAT |
Name-to-Thing | n2t |
https://n2t.net/phylomedb:Phy000CLXM_RAT |