BeetleBase is a comprehensive sequence database and community resource for Tribolium genetics, genomics and developmental biology. It incorporates information about genes, mutants, genetic markers, expressed sequence tags and publications.
- Prefix
beetlebase- Keywords
- cdna/est genome genome/gene interaction/pathway protein sequence
- Links
- Homepage
- Publications
- 2009 BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in BeetleBase should match this regular expression:
^TC\d+$ - Example Local Unique Identifier
- TC010103 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from BeetleBase should match this regular expression:
^beetlebase:TC\d+$ - Example CURIE
- beetlebase:TC010103
Contacts
- Contact
-
Susan J. Brown
0000-0002-7984-0445
- Identifier Space Owner
-
Kansas State University
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 7 mappings to external registries with 3 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
BEETLEBASE
|
|
Integbio
|
integbio |
nbdc01820
|
|
Identifiers.org
|
miriam |
beetlebase
|
|
N2T
|
n2t |
beetlebase
|
|
NCBI
|
ncbi |
BEETLEBASE
|
|
Prefix Commons
|
prefixcommons |
beetlebase
|
|
re3data
|
re3data |
r3d100010921
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier TC010103 is used to demonstrate the providers
available for BeetleBase. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| BeetleBase | beetlebase |
http://beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name=TC010103 |
| Bioregistry | bioregistry |
https://bioregistry.io/beetlebase:TC010103 |
| Identifiers.org | miriam |
https://identifiers.org/beetlebase:TC010103 |
| Name-to-Thing | n2t |
https://n2t.net/beetlebase:TC010103 |
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| Bio2RDF | bio2rdf |
http://bio2rdf.org/beetlebase:TC010103 |