Registry PubChem CID
PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Compound archives chemical structures and records.
- Prefix
pubchem.compound- Alternative Prefixes
- DSSTox_CID CID PUBCHEM_CID pubchem_id Pubchem PubChem_Compound_CID
- Links
- Homepage @pubchem
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in PubChem CID should match this regular expression:
^\d+$ - Example Local Unique Identifier
- 100101 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from PubChem CID should match this regular expression:
^pubchem\.compound:\d+$ - Example CURIE
- pubchem.compound:100101
Metaregistry PubChem CID
The metaregistry provides mappings between the Bioregistry and other registries. There are
12 mappings to external registries for pubchem.compound with
9 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
PUBCHEM.COMPOUND
|
|
| Biolink Model Registry | biolink |
CID
|
|
| Cellosaurus Registry | cellosaurus |
PubChem
|
|
| Chemical Information Ontology | cheminf |
000140
|
|
| EDAM Ontology | edam |
2639
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.g63c77
|
|
| Gene Ontology Registry | go |
PubChem_Compound
|
|
Identifiers.org
|
miriam |
pubchem.compound
|
|
Name-to-Thing
|
n2t |
pubchem.compound
|
|
| Prefix Commons | prefixcommons |
pubchem.compound
|
|
| Registry of Research Data Repositories | re3data |
r3d100010129
|
|
Wikidata Property
|
wikidata |
P662
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
pubchem.compound:100101
is used to demonstrate the provides available for
pubchem.compound. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| PubChem CID | pubchem.compound |
https://pubchem.ncbi.nlm.nih.gov/compound/100101 |
| Bioregistry | bioregistry |
https://bioregistry.io/pubchem.compound:100101 |
| Identifiers.org | miriam |
https://identifiers.org/pubchem.compound:100101 |
| Name-to-Thing | n2t |
https://n2t.net/pubchem.compound:100101 |
| None | scholia |
https://scholia.toolforge.org/pubchem/100101 |
| None | scholia |
https://scholia.toolforge.org/pubchem/100101 |
Extra Providers
Additional providers curated in the Bioregistry are listed here.
| Code | Name | URL |
|---|---|---|
scholia |
Scholia | https://scholia.toolforge.org/pubchem/100101 |