Registry FlyBase Gene
FlyBase is the database of the Drosophila Genome Projects and of associated literature.
- Prefix
flybase- Preferred Prefix
FlyBase- Alternative Prefixes
- FlyBase FB
- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in FlyBase Gene should match this regular expression:
^FB\w{2}\d{7}$ - Example Local Unique Identifier
- FBgn0011293 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from FlyBase Gene should match this regular expression:
^flybase:FB\w{2}\d{7}$ - Example CURIE
- flybase:FBgn0011293
Metaregistry FlyBase Gene
The metaregistry provides mappings between the Bioregistry and other registries. There are
12 mappings to external registries for flybase with
6 unique external prefixes.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
| BioContext | biocontext |
FlyBase
|
| Cellosaurus Registry | cellosaurus |
FlyBase
|
| EDAM Ontology | edam |
1089
|
FAIRSharing
|
fairsharing |
FAIRsharing.wrvze3
|
| Gene Ontology Registry | go |
FB
|
Identifiers.org
|
miriam |
fb
|
Name-to-Thing
|
n2t |
fb
|
| National Center for Biotechnology Information Registry | ncbi |
FLYBASE
|
| Prefix Commons | prefixcommons |
flybase
|
| Registry of Research Data Repositories | re3data |
r3d100010591
|
| UniProt Cross-ref database | uniprot |
FlyBase
|
Wikidata Property
|
wikidata |
P3852
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
flybase:FBgn0011293
is used to demonstrate the provides available for
flybase. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| FlyBase Gene | flybase |
https://flybase.org/reports/FBgn0011293 |
| Bioregistry | bioregistry |
https://bioregistry.io/flybase:FBgn0011293 |
| Identifiers.org | miriam |
https://identifiers.org/fb:FBgn0011293 |
| Name-to-Thing | n2t |
https://n2t.net/fb:FBgn0011293 |
| None | agr |
https://www.alliancegenome.org/gene/FB:FBgn0011293 |
| None | bioentitylink |
https://bioentity.link/#/lexicon/public/FBgn0011293 |
Extra Providers
Additional providers curated in the Bioregistry are listed here.
| Code | Name | URL |
|---|---|---|
agr |
FlyBase through the Alliance of Genome Resources | https://www.alliancegenome.org/gene/FB:FBgn0011293 |
bioentitylink |
FlyBase through BioEntity Link | https://bioentity.link/#/lexicon/public/FBgn0011293 |