FlyBase is the database of the Drosophila Genome Projects and of associated literature.

Prefix

flybase

Preferred Prefix

FlyBase

Alternative Prefixes

FB FlyBase

Keywords

anatomy bioinformatics comparative genomics dna functional genomics genetics genome genomics interaction life science molecular biology molecular genetics

Links

Homepage @flybasedotorg

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in FlyBase Gene should match this regular expression:
^FB\w{2}\d{7}$

Example Local Unique Identifier

FBgn0011293   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from FlyBase Gene should match this regular expression:
^flybase:FB\w{2}\d{7}$

Example CURIE

flybase:FBgn0011293

Publications

• 1999 The FlyBase database of the Drosophila Genome Projects and community literature.
• 1998 FlyBase: a Drosophila database.
• 1997 FlyBase: a Drosophila database. The FlyBase consortium.
• 1996 FlyBase: the Drosophila database.
• 1994 FlyBase--the Drosophila database. The FlyBase Consortium.
• 1994 FlyBase--the Drosophila genetic database.
• 2021 FlyBase: updates to the Drosophila melanogaster knowledge base.
• 2019 FlyBase 2.0: the next generation.
• 2018 Using FlyBase to Find Functionally Related Drosophila Genes.
• 2016 Exploring FlyBase Data Using QuickSearch.
• 2016 FlyBase at 25: looking to the future.
• 2016 FlyBase portals to human disease research using Drosophila models.
• 2015 FlyBase: establishing a Gene Group resource for Drosophila melanogaster.
• 2015 Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
• 2015 Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
• 2014 FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations.
• 2013 FlyBase 102--advanced approaches to interrogating FlyBase.
• 2012 Directly e-mailing authors of newly published papers encourages community curation.
• 2011 FlyBase 101--the basics of navigating FlyBase.
• FlyBase: enhancing Drosophila Gene Ontology annotations.
• 2008 FlyBase: enhancing Drosophila Gene Ontology annotations.
• 2008 FlyBase : a database for the Drosophila research community.
• 2007 FlyBase: integration and improvements to query tools.
• 2006 FlyBase: genomes by the dozen.
• 2006 FlyBase: anatomical data, images and queries.
• 2005 FlyBase: genes and gene models.
• 2003 The FlyBase database of the Drosophila genome projects and community literature.
• 2002 The FlyBase database of the Drosophila genome projects and community literature.

Has Part

FBbt FBcv fbrf FBSP fbtc

The metaregistry provides mappings between the Bioregistry and other registries. There are 12 mappings to external registries for flybase with 7 unique external prefixes.

Providers are various services that resolve CURIEs to URLs. The example CURIE flybase:FBgn0011293 is used to demonstrate the provides available for flybase. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Additional providers curated in the Bioregistry are listed here.