FlyBase is the database of the Drosophila Genome Projects and of associated literature.

Prefix
flybase
Preferred Prefix
FlyBase
Alternative Prefixes
FB FlyBase
Keywords
allele anatomy bio.tools bioinformatics blast comparative genomics controlled term dna drosophilidae expression faseb list functional genomics gene genetics genome genomics genotype image image collection interaction life science life-cycle molecular biology molecular genetics movie mutant phenotype rna-seq sequence stock video resource
Links
Homepage @flybasedotorg
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in FlyBase Gene should match this regular expression:
^FB\w{2}\d{7}$

Example Local Unique Identifier
FBgn0011293   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from FlyBase Gene should match this regular expression:
^FlyBase:FB\w{2}\d{7}$

Example CURIE
FlyBase:FBgn0011293
Publications
Ontology

A summary of the relations in the Bioregistry schema can be found here.

Has Parts (bfo:0000051 )
FBcv fbrf FBSP fbtc
In Collection
Global Biodata Coalition - Global Core Biodata Resources
Metaregistry FlyBase Gene

The metaregistry provides mappings between the Bioregistry and other registries. There are 15 mappings to external registries for this resource with 9 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext FlyBase
Cellosaurus Cellosaurus Registry logo cellosaurus FlyBase
EDAM EDAM Ontology logo edam 1089
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.wrvze3
GO Gene Ontology Registry logo go FB
Integbio Integbio logo integbio nbdc00064
Identifiers.org Identifiers.org logo miriam fb
N2T Name-to-Thing logo n2t fb
NCBI National Center for Biotechnology Information Registry logo ncbi FLYBASE
Pathguide Pathguide logo pathguide 460
Prefix Commons Prefix Commons logo prefixcommons flybase
re3data Registry of Research Data Repositories logo re3data r3d100010591
RRID Research Resource Identifiers logo rrid FlyBase
UniProt UniProt Cross-ref database logo uniprot DB-0026
Wikidata Wikidata Property logo wikidata P3852
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE FlyBase:FBgn0011293 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
FlyBase Gene flybase https://flybase.org/reports/FBgn0011293
Bioregistry bioregistry https://bioregistry.io/flybase:FBgn0011293
Identifiers.org miriam https://identifiers.org/fb:FBgn0011293
Name-to-Thing n2t https://n2t.net/fb:FBgn0011293
Research Resource Identifiers rrid https://scicrunch.org/resolver/RRID:FlyBase_FBgn0011293
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
agr FlyBase through the Alliance of Genome Resources https://www.alliancegenome.org/gene/FB:FBgn0011293
bio2rdf Bio2RDF http://bio2rdf.org/flybase:FBgn0011293