HomoloGene is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes.

gene genome life science
Eric W. Sayers   0000-0001-8394-3802
Pattern for Local Unique Identifiers

Local identifiers in HomoloGene should match this regular expression:

Example Local Unique Identifier
1000   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from HomoloGene should match this regular expression:

Example CURIE
2010 Database resources of the National Center for Biotechnology Information
Metaregistry HomoloGene

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for this resource with 4 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext HOMOLOGENE
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.mzc066
Integbio Integbio logo integbio nbdc00101
Identifiers.org Identifiers.org logo miriam homologene
N2T Name-to-Thing logo n2t homologene
Prefix Commons Prefix Commons logo prefixcommons homologene
TogoID togoid Homologene
Wikidata Wikidata Property logo wikidata P593

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 1000 is used to demonstrate the providers available for HomoloGene. A guide for curating additional providers can be found here.

Name Metaprefix URI
HomoloGene homologene https://www.ncbi.nlm.nih.gov/homologene/1000
Bioregistry bioregistry https://bioregistry.io/homologene:1000
Identifiers.org miriam https://identifiers.org/homologene:1000
Name-to-Thing n2t https://n2t.net/homologene:1000
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
CURATOR_REVIEW Bio2RDF http://homologene.bio2rdf.org/describe/?url=http://bio2rdf.org/homologene:1000
bio2rdf Bio2RDF http://bio2rdf.org/homologene:1000