Registry A Knowledge Resource for Innate Immunity Interactions and Pathways

InnateDB has been developed to facilitate systems level investigations of the mammalian (human, mouse and bovine) innate immune response. Its goal is to provide a manually-curated knowledgebase of the genes, proteins, and particularly, the interactions and signaling responses involved in mammalian innate immunity. InnateDB incorporates information of the whole human, mouse and bovine interactomes by integrating interaction and pathway information from several of the major publicly available databases but aims to capture an improved coverage of the innate immunity interactome through manual curation.

gene immunology interaction life science pathway protein
Homepage @innatedb
Missing Contact
Pattern for Local Unique Identifiers
Missing LUI pattern
Example Local Unique Identifier
20021   Resolve
Example CURIE
2012 InnateDB: systems biology of innate immunity and beyond--recent updates and continuing curation.
Charles Tapley Hoyt   0000-0003-4423-4370   cthoyt
Metaregistry A Knowledge Resource for Innate Immunity Interactions and Pathways

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for innatedb with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.rb2drw
Prefix Commons Prefix Commons logo prefixcommons innatedb
re3data Registry of Research Data Repositories logo re3data r3d100010676

Providers are various services that resolve CURIEs to URLs. The example CURIE innatedb:20021 is used to demonstrate the provides available for innatedb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
A Knowledge Resource for Innate Immunity Interactions and Pathways innatedb
Bioregistry bioregistry
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
bio2rdf Bio2RDF