InnateDB has been developed to facilitate systems level investigations of the mammalian (human, mouse and bovine) innate immune response. Its goal is to provide a manually-curated knowledgebase of the genes, proteins, and particularly, the interactions and signaling responses involved in mammalian innate immunity. InnateDB incorporates information of the whole human, mouse and bovine interactomes by integrating interaction and pathway information from several of the major publicly available databases but aims to capture an improved coverage of the innate immunity interactome through manual curation.
innatedb
The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 3 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
FAIRSharing
|
fairsharing |
FAIRsharing.rb2drw
|
|
Prefix Commons
|
prefixcommons |
innatedb
|
|
re3data
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re3data |
r3d100010676
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
innatedb:20021
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
A Knowledge Resource for Innate Immunity Interactions and Pathways | innatedb |
http://www.innatedb.ca/getGeneCard.do?id=20021 |
Bioregistry | bioregistry |
https://bioregistry.io/innatedb:20021 |
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/innatedb:20021 |