Registry A Knowledge Resource for Innate Immunity Interactions and Pathways

InnateDB has been developed to facilitate systems level investigations of the mammalian (human, mouse and bovine) innate immune response. Its goal is to provide a manually-curated knowledgebase of the genes, proteins, and particularly, the interactions and signaling responses involved in mammalian innate immunity. InnateDB incorporates information of the whole human, mouse and bovine interactomes by integrating interaction and pathway information from several of the major publicly available databases but aims to capture an improved coverage of the innate immunity interactome through manual curation.

gene immunology interaction life science pathway protein
David Lynn   0000-0003-4664-1404
Pattern for Local Unique Identifiers
Missing LUI pattern
Example Local Unique Identifier
20021   Resolve
Example CURIE
2012 InnateDB: systems biology of innate immunity and beyond--recent updates and continuing curation
Charles Tapley Hoyt   0000-0003-4423-4370   cthoyt
Metaregistry A Knowledge Resource for Innate Immunity Interactions and Pathways

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 5 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.rb2drw
Integbio Integbio logo integbio nbdc01870
Pathguide Pathguide logo pathguide 264
Prefix Commons Prefix Commons logo prefixcommons innatedb
re3data Registry of Research Data Repositories logo re3data r3d100010676

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 20021 is used to demonstrate the providers available for A Knowledge Resource for Innate Immunity Interactions and Pathways. A guide for curating additional providers can be found here.

Name Metaprefix URI
A Knowledge Resource for Innate Immunity Interactions and Pathways innatedb
Bioregistry bioregistry
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF