InnateDB has been developed to facilitate systems level investigations of the mammalian (human, mouse and bovine) innate immune response. Its goal is to provide a manually-curated knowledgebase of the genes, proteins, and particularly, the interactions and signaling responses involved in mammalian innate immunity. InnateDB incorporates information of the whole human, mouse and bovine interactomes by integrating interaction and pathway information from several of the major publicly available databases but aims to capture an improved coverage of the innate immunity interactome through manual curation.

Prefix

innatedb

Keywords

curated information gene genome/gene health/disease immunity immunology interaction interaction/pathway interactome life science molecular interaction organism pathway protein protein interactions psi-mi

Links

Homepage

Publications

2012 InnateDB: systems biology of innate immunity and beyond--recent updates and continuing curation

Pattern for Local Unique Identifiers

Missing LUI pattern

Example Local Unique Identifier

20021   Resolve

Example CURIE

innatedb:20021

Contact

David Lynn   0000-0003-4664-1404

Reviewer

Charles Tapley Hoyt   0000-0003-4423-4370   cthoyt

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 5 mappings to external registries with 5 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 20021 is used to demonstrate the providers available for A Knowledge Resource for Innate Immunity Interactions and Pathways. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.