Registry Reactome
The Reactome project is a collaboration to develop a curated resource of core pathways and reactions in human biology.
- Prefix
reactome- Alternative Prefixes
- REACT RE
- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in Reactome should match this regular expression:
^R-[A-Z]{3}-\d+(-\d+)?(\.\d+)?$ - Example Local Unique Identifier
- R-BTA-418592 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Reactome should match this regular expression:
^reactome:R-[A-Z]{3}-\d+(-\d+)?(\.\d+)?$ - Example CURIE
- reactome:R-BTA-418592
- Publications
- 2005 Reactome: a knowledgebase of biological pathways.
Metaregistry Reactome
The metaregistry provides mappings between the Bioregistry and other registries. There are
9 mappings to external registries for reactome with
5 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
REACTOME
|
|
| Chemical Information Ontology | cheminf |
000411
|
|
| EDAM Ontology | edam |
1155
|
|
| Gene Ontology Registry | go |
Reactome
|
|
Identifiers.org
|
miriam |
reactome
|
|
Name-to-Thing
|
n2t |
reactome
|
|
| Prefix Commons | prefixcommons |
reactome
|
|
| Registry of Research Data Repositories | re3data |
r3d100010861
|
|
Wikidata Property
|
wikidata |
P3937
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
reactome:R-BTA-418592
is used to demonstrate the provides available for
reactome. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| Reactome | reactome |
https://reactome.org/content/detail/R-BTA-418592 |
| Bioregistry | bioregistry |
https://bioregistry.io/reactome:R-BTA-418592 |
| Identifiers.org | miriam |
https://identifiers.org/reactome:R-BTA-418592 |
| Name-to-Thing | n2t |
https://n2t.net/reactome:R-BTA-418592 |
| None | pathwaycommons |
https://apps.pathwaycommons.org/pathways?uri=http%3A%2F%2Fidentifiers.org%2Freactome%2FR-BTA-418592 |
Extra Providers
Additional providers curated in the Bioregistry are listed here.
| Code | Name | URL |
|---|---|---|
pathwaycommons |
Pathway Commons | https://apps.pathwaycommons.org/pathways?uri=http%3A%2F%2Fidentifiers.org%2Freactome%2FR-BTA-418592 |