The Reactome project is a collaboration to develop a curated resource of core pathways and reactions in human biology.
- Prefix
reactome- Alternative Prefixes
- REACT RE reactome.pathway
- Keywords
- human pathway reaction
- License
- CC0-1.0
- Links
- Homepage
- Contact
- Peter D'Eustachio 0000-0002-5494-626X deustp01
- Pattern for Local Unique Identifiers
-
Local identifiers in Reactome should match this regular expression:
^R-[A-Z]{3}-\d+(-\d+)?(\.\d+)?$ - Example Local Unique Identifier
- R-BTA-418592 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Reactome should match this regular expression:
^reactome:R-[A-Z]{3}-\d+(-\d+)?(\.\d+)?$ - Example CURIE
- reactome:R-BTA-418592
- Publications
- 2005 Reactome: a knowledgebase of biological pathways
- References
- GitHub PR https://github.com/biopragmatics/bioregistry/pull/1086
- Contributors
-
- contributor Sierra Moxon 0000-0002-8719-7760 sierra-moxon
Ontology
A summary of the relations in the Bioregistry schema can be found here.
- In Collection
- Global Biodata Coalition - Global Core Biodata Resources
Metaregistry Reactome
The metaregistry provides mappings between the Bioregistry and other registries. There are 12 mappings to external registries for this resource with 8 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
REACTOME
|
|
| CHEMINF | cheminf |
000411
|
|
EDAM
|
edam |
1155
|
|
GO
|
go |
Reactome
|
|
Integbio
|
integbio |
nbdc00185
|
|
Identifiers.org
|
miriam |
reactome
|
|
N2T
|
n2t |
reactome
|
|
Pathguide
|
pathguide |
103
|
|
Prefix Commons
|
prefixcommons |
reactome
|
|
re3data
|
re3data |
r3d100010861
|
|
| TogoID | togoid |
ReactomePathway
|
|
Wikidata
|
wikidata |
P3937
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier R-BTA-418592 is used to demonstrate the providers
available for Reactome. A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| Reactome | reactome |
https://reactome.org/content/detail/R-BTA-418592 |
| Bioregistry | bioregistry |
https://bioregistry.io/reactome:R-BTA-418592 |
| Identifiers.org | miriam |
https://identifiers.org/reactome:R-BTA-418592 |
| Name-to-Thing | n2t |
https://n2t.net/reactome:R-BTA-418592 |
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Code | Name | URL |
|---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/reactome:R-BTA-418592 |
browser |
Reactome Pathway Browser | https://reactome.org/PathwayBrowser/#/R-BTA-418592 |
pathwaycommons |
Pathway Commons | https://apps.pathwaycommons.org/pathways?uri=http%3A%2F%2Fidentifiers.org%2Freactome%2FR-BTA-418592 |