The Reactome project is a collaboration to develop a curated resource of core pathways and reactions in human biology.
reactome
Local identifiers in Reactome should match this
regular expression:
^R-[A-Z]{3}-\d+(-\d+)?(\.\d+)?$
Compact URIs (CURIEs) constructed from Reactome should match
this regular expression:
^reactome:R-[A-Z]{3}-\d+(-\d+)?(\.\d+)?$
The metaregistry provides mappings between the Bioregistry and other registries. There are
8 mappings to external registries for reactome
.
Registry Name | Metaprefix | External Prefix |
---|---|---|
BioContext | biocontext |
REACT
|
Chemical Information Ontology | cheminf |
000411
|
Gene Ontology Registry | go |
Reactome
|
Identifiers.org
![]() |
miriam |
reactome
|
Name-to-Thing
![]() |
n2t |
reactome
|
Prefix Commons | prefixcommons |
reactome
|
UniProt Cross-ref database | uniprot |
Reactome
|
Wikidata Property
|
wikidata |
P3937
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
reactome:
is used to demonstrate the provides available for
reactome
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
Reactome | reactome |
https://reactome.org/content/detail/R-BTA-418592 |
Bioregistry | bioregistry |
https://bioregistry.io/reactome:R-BTA-418592 |
Identifiers.org | miriam |
https://identifiers.org/reactome:R-BTA-418592 |
Name-to-Thing | n2t |
https://n2t.net/reactome:R-BTA-418592 |
None | pathwaycommons |
https://apps.pathwaycommons.org/pathways?uri=http%3A%2F%2Fidentifiers.org%2Freactome%2FR-BTA-418592 |
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
pathwaycommons | Pathway Commons | https://apps.pathwaycommons.org/pathways?uri=http%3A%2F%2Fidentifiers.org%2Freactome%2FR-BTA-418592 |