ProDom is a database of protein domain families generated from the global comparison of all available protein sequences.
- Prefix
prodom- Keywords
- classification protein
- Links
- Homepage
- Publications
- https://bioregistry.io/pubmed:9847197
- https://bioregistry.io/pubmed:9399865
- https://bioregistry.io/pubmed:9009835
- 2005 The ProDom database of protein domain families: more emphasis on 3D
- 2002 ProDom: automated clustering of homologous domains
- https://bioregistry.io/pubmed:10592243
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in ProDom should match this regular expression:
^PD\d+$ - Example Local Unique Identifier
- PD10000 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from ProDom should match this regular expression:
^prodom:PD\d+$ - Example CURIE
- prodom:PD10000
Contacts
- Contact
-
Daniel Kahn
0000-0003-1644-0169
- Identifier Space Owner
-
Laboratoire des Interactions Plantes-Microorganismes, INRA/CNRS
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 5 mappings to external registries with 2 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
PRODOM
|
|
Integbio
|
integbio |
nbdc00174
|
|
Identifiers.org
|
miriam |
prodom
|
|
N2T
|
n2t |
prodom
|
|
Prefix Commons
|
prefixcommons |
prodom
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier PD10000 is used to demonstrate the providers
available for ProDom. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| ProDom | prodom |
http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=PD10000 |
| Bioregistry | bioregistry |
https://bioregistry.io/prodom:PD10000 |
| Identifiers.org | miriam |
https://identifiers.org/prodom:PD10000 |
| Name-to-Thing | n2t |
https://n2t.net/prodom:PD10000 |
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| Bio2RDF | bio2rdf |
http://bio2rdf.org/prodom:PD10000 |