Database of validation results for ligands and non-standard residues in the Protein Data Bank.

This resource is a provider. This means that while it may have its own prefix, it actually reuses the identifiers provided by the pdb prefix. For all use cases, you should use pdb instead of validatordb.

Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in ValidatorDB should match this regular expression:

Example Local Unique Identifier
2h6o   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from ValidatorDB should match this regular expression:

Example CURIE

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for validatordb.

Registry Name Metaprefix External Prefix miriam validatordb
Name-to-Thing n2t validatordb
Prefix Commons prefixcommons VALIDATORDB

Providers are various services that resolve CURIEs to URLs. The example CURIE validatordb:2h6o is used to demonstrate the provides available for validatordb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
ValidatorDB validatordb
Bioregistry bioregistry miriam
Name-to-Thing n2t