InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences.
interprointerpro
Local identifiers in InterPro should match this
regular expression:
^IPR\d{6}$
Compact URIs (CURIEs) constructed from InterPro should match
this regular expression:
^interpro:IPR\d{6}$
The metaregistry provides mappings between the Bioregistry and other registries. There are
9 mappings to external registries for interpro.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
| Biolink Model Registry | biolink |
interpro
|
| Gene Ontology Registry | go |
InterPro
|
| Identifiers.org | miriam |
interpro
|
| Name-to-Thing | n2t |
interpro
|
| National Center for Biotechnology Information Registry | ncbi |
InterPro
|
| OBO Foundry | obofoundry |
IPR
|
| Prefix Commons | prefixcommons |
IPR
|
| UniProt Cross-ref database | uniprot |
InterPro
|
| Wikidata Property | wikidata |
P2926
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
interpro:IPR016380 is used to demonstrate the provides available for
interpro. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| InterPro | interpro |
https://www.ebi.ac.uk/interpro/entry/IPR016380 |
| Bioregistry | bioregistry |
https://bioregistry.io/interpro:IPR016380 |
| Identifiers.org | miriam |
https://identifiers.org/interpro:IPR016380 |
| OBO Foundry | obofoundry |
http://purl.obolibrary.org/obo/IPR_IPR016380 |
| Name-to-Thing | n2t |
https://n2t.net/interpro:IPR016380 |
Additional providers curated in the Bioregistry are listed here.
| Code | Name | URL |
|---|---|---|
| CURATOR_REVIEW | Bio2RDF | http://interpro.bio2rdf.org/describe/?url=http://bio2rdf.org/interpro:IPR016380 |