Registry InterPro
InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences.
- Prefix
interpro- Preferred Prefix
interpro- Alternative Prefixes
- IPR InterPro IP
- Links
- Homepage
- Contact
- InterPro Help
- Pattern for Local Unique Identifiers
-
Local identifiers in InterPro should match this regular expression:
^IPR\d{6}$ - Example Local Unique Identifier
- IPR016380 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from InterPro should match this regular expression:
^interpro:IPR\d{6}$ - Example CURIE
- interpro:IPR016380
- Publications
- 2005 InterPro, progress and status in 2005.
Metaregistry InterPro
The metaregistry provides mappings between the Bioregistry and other registries. There are
13 mappings to external registries for interpro with
6 unique external prefixes.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
| BioContext | biocontext |
IPR
|
| Biolink Model Registry | biolink |
interpro
|
| EDAM Ontology | edam |
1133
|
FAIRSharing
|
fairsharing |
FAIRsharing.pda11d
|
| Gene Ontology Registry | go |
InterPro
|
Identifiers.org
|
miriam |
interpro
|
Name-to-Thing
|
n2t |
interpro
|
| National Center for Biotechnology Information Registry | ncbi |
InterPro
|
OBO Foundry
|
obofoundry |
ipr
|
| Prefix Commons | prefixcommons |
interpro
|
| Registry of Research Data Repositories | re3data |
r3d100010798
|
| UniProt Cross-ref database | uniprot |
InterPro
|
Wikidata Property
|
wikidata |
P2926
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
interpro:IPR016380
is used to demonstrate the provides available for
interpro. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| InterPro | interpro |
https://www.ebi.ac.uk/interpro/entry/IPR016380 |
| Bioregistry | bioregistry |
https://bioregistry.io/interpro:IPR016380 |
| Identifiers.org | miriam |
https://identifiers.org/interpro:IPR016380 |
| OBO Foundry | obofoundry |
http://purl.obolibrary.org/obo/IPR_IPR016380 |
| Name-to-Thing | n2t |
https://n2t.net/interpro:IPR016380 |
| None | CURATOR_REVIEW |
http://interpro.bio2rdf.org/describe/?url=http://bio2rdf.org/interpro:IPR016380 |
Extra Providers
Additional providers curated in the Bioregistry are listed here.
| Code | Name | URL |
|---|---|---|
CURATOR_REVIEW |
Bio2RDF | http://interpro.bio2rdf.org/describe/?url=http://bio2rdf.org/interpro:IPR016380 |