InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences.

Prefix
interpro
Preferred Prefix
interpro
Alternative Prefixes
InterPro IPR IP
Keywords
bioinformatics biology domain obo ontology protein
Links
Homepage Repository
Contact
InterPro Help
Pattern for Local Unique Identifiers

Local identifiers in InterPro should match this regular expression:
^IPR\d{6}$

Example Local Unique Identifier
IPR016380   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from InterPro should match this regular expression:
^interpro:IPR\d{6}$

Example CURIE
interpro:IPR016380
Publications
Ontology

A summary of the relations in the Bioregistry schema can be found here.

In Collection
Global Biodata Coalition - Global Core Biodata Resources
Metaregistry InterPro

The metaregistry provides mappings between the Bioregistry and other registries. There are 15 mappings to external registries for this resource with 8 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext IPR
Biolink Biolink Model Registry logo biolink interpro
EDAM EDAM Ontology logo edam 1133
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.pda11d
GO Gene Ontology Registry logo go InterPro
Integbio Integbio logo integbio nbdc00108
Identifiers.org Identifiers.org logo miriam interpro
N2T Name-to-Thing logo n2t interpro
NCBI National Center for Biotechnology Information Registry logo ncbi InterPro
OBO Foundry OBO Foundry logo obofoundry ipr
Prefix Commons Prefix Commons logo prefixcommons interpro
re3data Registry of Research Data Repositories logo re3data r3d100010798
TogoID togoid Interpro
UniProt UniProt Cross-ref database logo uniprot DB-0052
Wikidata Wikidata Property logo wikidata P2926
RDF Information

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/IPR_$1

Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier IPR016380 is used to demonstrate the providers available for InterPro. A guide for curating additional providers can be found here.

Name Metaprefix URI
InterPro interpro https://www.ebi.ac.uk/interpro/entry/InterPro/IPR016380
InterPro (RDF) rdf http://purl.obolibrary.org/obo/IPR_IPR016380
Bioregistry bioregistry https://bioregistry.io/interpro:IPR016380
Identifiers.org miriam https://identifiers.org/interpro:IPR016380
OBO Foundry obofoundry http://purl.obolibrary.org/obo/IPR_IPR016380
Name-to-Thing n2t https://n2t.net/interpro:IPR016380
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
CURATOR_REVIEW Bio2RDF http://interpro.bio2rdf.org/describe/?url=http://bio2rdf.org/interpro:IPR016380
bio2rdf Bio2RDF http://bio2rdf.org/interpro:IPR016380