InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences.
interpro
interpro
Local identifiers in InterPro should match this
regular expression:
^IPR\d{6}$
Compact URIs (CURIEs) constructed from InterPro should match
this regular expression:
^interpro:IPR\d{6}$
The metaregistry provides mappings between the Bioregistry and other registries. There are
13 mappings to external registries for interpro
with
7 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
IPR
|
|
Biolink Model Registry | biolink |
interpro
|
|
EDAM Ontology | edam |
1133
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.pda11d
|
|
Gene Ontology Registry | go |
InterPro
|
|
Identifiers.org
![]() |
miriam |
interpro
|
|
Name-to-Thing
![]() |
n2t |
interpro
|
|
National Center for Biotechnology Information Registry | ncbi |
InterPro
|
|
OBO Foundry
![]() |
obofoundry |
ipr
|
|
Prefix Commons | prefixcommons |
interpro
|
|
Registry of Research Data Repositories | re3data |
r3d100010798
|
|
UniProt Cross-ref database | uniprot |
DB-0052
|
|
Wikidata Property
|
wikidata |
P2926
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
interpro:IPR016380
is used to demonstrate the provides available for
interpro
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
InterPro | interpro |
https://www.ebi.ac.uk/interpro/entry/IPR016380 |
Bioregistry | bioregistry |
https://bioregistry.io/interpro:IPR016380 |
Identifiers.org | miriam |
https://identifiers.org/interpro:IPR016380 |
OBO Foundry | obofoundry |
http://purl.obolibrary.org/obo/IPR_IPR016380 |
Name-to-Thing | n2t |
https://n2t.net/interpro:IPR016380 |
None | CURATOR_REVIEW |
http://interpro.bio2rdf.org/describe/?url=http://bio2rdf.org/interpro:IPR016380 |
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
CURATOR_REVIEW |
Bio2RDF | http://interpro.bio2rdf.org/describe/?url=http://bio2rdf.org/interpro:IPR016380 |