OrthoDB presents a catalog of eukaryotic orthologous protein-coding genes across vertebrates, arthropods, and fungi. Orthology refers to the last common ancestor of the species under consideration, and thus OrthoDB explicitly delineates orthologs at each radiation along the species phylogeny. The database of orthologs presents available protein descriptors, together with Gene Ontology and InterPro attributes, which serve to provide general descriptive annotations of the orthologous groups

Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in OrthoDB should match this regular expression:

Example Local Unique Identifier
Q9P0K8   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from OrthoDB should match this regular expression:

Example CURIE

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for orthodb.

Registry Name Metaprefix External Prefix
Identifiers.org miriam orthodb
Name-to-Thing n2t orthodb
Prefix Commons prefixcommons ORTHODB
UniProt Cross-ref database uniprot OrthoDB

Providers are various services that resolve CURIEs to URLs. The example CURIE orthodb:Q9P0K8 is used to demonstrate the provides available for orthodb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
OrthoDB orthodb http://cegg.unige.ch/orthodb/results?searchtext=Q9P0K8
Bioregistry bioregistry https://bioregistry.io/orthodb:Q9P0K8
Identifiers.org miriam https://identifiers.org/orthodb:Q9P0K8
Name-to-Thing n2t https://n2t.net/orthodb:Q9P0K8