The Functional Single Nucleotide Polymorphism (F-SNP) database integrates information obtained from databases about the functional effects of SNPs. These effects are predicted and indicated at the splicing, transcriptional, translational and post-translational level. In particular, users can retrieve SNPs that disrupt genomic regions known to be functional, including splice sites and transcriptional regulatory regions. Users can also identify non-synonymous SNPs that may have deleterious effects on protein structure or function, interfere with protein translation or impede post-translational modification.

dna protein
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in F-SNP should match this regular expression:

Example Local Unique Identifier
rs17852708   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from F-SNP should match this regular expression:

Example CURIE
Metaregistry F-SNP

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext FSNP logo miriam fsnp
N2T Name-to-Thing logo n2t fsnp
Prefix Commons Prefix Commons logo prefixcommons fsnp

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier rs17852708 is used to demonstrate the providers available for F-SNP. A guide for curating additional providers can be found here.

Name Metaprefix URI
F-SNP fsnp
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF