Registry Saccharomyces Genome Database
The Saccharomyces Genome Database (SGD) project collects information and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae.
- Prefix
sgd- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in Saccharomyces Genome Database should match this regular expression:
^((S\d+$)|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?))$ - Example Local Unique Identifier
- S000002493 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Saccharomyces Genome Database should match this regular expression:
^sgd:((S\d+$)|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?))$ - Example CURIE
- sgd:S000002493
- References
-
- Publication https://bioregistry.io/pubmed:14681421
Metaregistry Saccharomyces Genome Database
The metaregistry provides mappings between the Bioregistry and other registries. There are
9 mappings to external registries for sgd.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
| BioContext | biocontext |
SGD
|
FAIRSharing
|
fairsharing |
FAIRsharing.pzvw40
|
| Gene Ontology Registry | go |
SGD
|
Identifiers.org
|
miriam |
sgd
|
Name-to-Thing
|
n2t |
sgd
|
| National Center for Biotechnology Information Registry | ncbi |
SGD
|
| Prefix Commons | prefixcommons |
sgd
|
| UniProt Cross-ref database | uniprot |
SGD
|
Wikidata Property
|
wikidata |
P3406
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
sgd:
is used to demonstrate the provides available for
sgd. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| Saccharomyces Genome Database | sgd |
https://www.yeastgenome.org/locus/S000002493 |
| Bioregistry | bioregistry |
https://bioregistry.io/sgd:S000002493 |
| Identifiers.org | miriam |
https://identifiers.org/sgd:S000002493 |
| Name-to-Thing | n2t |
https://n2t.net/sgd:S000002493 |
| None | CURATOR_REVIEW |
http://sgd.bio2rdf.org/describe/?url=http://bio2rdf.org/sgd:S000002493 |
| None | bioentitylink |
https://bioentity.link/#/lexicon/public/S000002493 |
| None | agr |
https://www.alliancegenome.org/gene/SGD:S000002493 |
Extra Providers
Additional providers curated in the Bioregistry are listed here.
| Code | Name | URL |
|---|---|---|
| CURATOR_REVIEW | Bio2RDF | http://sgd.bio2rdf.org/describe/?url=http://bio2rdf.org/sgd:S000002493 |
| bioentitylink | SGD through BioEntity Link | https://bioentity.link/#/lexicon/public/S000002493 |
| agr | SGD through the Alliance of Genome Resources | https://www.alliancegenome.org/gene/SGD:S000002493 |