The Saccharomyces Genome Database (SGD) project collects information and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae.

Prefix

sgd

Keywords

epigenetics eukaryotic genome life science nucleotide proteomics transcriptomics

Links

Homepage @yeastgenome

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in Saccharomyces Genome Database should match this regular expression:
^((S\d+$)|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?))$

Example Local Unique Identifier

S000002493   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Saccharomyces Genome Database should match this regular expression:
^sgd:((S\d+$)|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?))$

Example CURIE

sgd:S000002493

Publications

• 1998 Expanding yeast knowledge online.
• 1998 Comparison of the complete protein sets of worm and yeast: orthology and divergence.
• 1999 Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure.
• 1998 SGD: Saccharomyces Genome Database.
• 1997 Yeast as a model organism.
• 1997 Genetic and physical maps of Saccharomyces cerevisiae.
• 1997 Molecular linguistics: extracting information from gene and protein sequences.
• 1995 Genetic nomenclature guide. Saccharomyces cerevisiae.
• 2016 From one to many: expanding the Saccharomyces cerevisiae reference genome panel.
• 2015 The Saccharomyces Genome Database: A Tool for Discovery.
• 2015 The Saccharomyces Genome Database: Exploring Genome Features and Their Annotations.
• 2015 The Saccharomyces Genome Database: Gene Product Annotation of Function, Process, and Component.
• 2015 The Saccharomyces Genome Database: Advanced Searching Methods and Data Mining.
• 2015 The Saccharomyces Genome Database: Exploring Biochemical Pathways and Mutant Phenotypes.
• 2015 The Saccharomyces Genome Database Variant Viewer.
• 2015 Biocuration at the Saccharomyces genome database.
• 2015 AGAPE (Automated Genome Analysis PipelinE) for pan-genome analysis of Saccharomyces cerevisiae.
• 2014 The complex portal--an encyclopaedia of macromolecular complexes.
• 2014 Standardized description of scientific evidence using the Evidence Ontology (ECO).
• 2014 The reference genome sequence of Saccharomyces cerevisiae: then and now.
• 2013 Saccharomyces genome database provides new regulation data.
• 2013 A guide to best practices for Gene Ontology (GO) manual annotation.
• 2013 The new modern era of yeast genomics: community sequencing and the resulting annotation of multiple Saccharomyces cerevisiae strains at the Saccharomyces Genome Database.
• 2013 The YeastGenome app: the Saccharomyces Genome Database at your fingertips.
• 2012 CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations.
• 2012 YeastMine--an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit.
• 2012 Considerations for creating and annotating the budding yeast Genome Map at SGD: a progress report.
• 2011 Saccharomyces Genome Database: the genomics resource of budding yeast.
• 2011 Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study.
• 2009 New mutant phenotype data curation system in the Saccharomyces Genome Database.
• 2009 Saccharomyces Genome Database provides mutant phenotype data.
• 2009 Functional annotations for the Saccharomyces cerevisiae genome: the knowns and the known unknowns.
• 2007 Gene Ontology annotations at SGD: new data sources and annotation methods.
• 2006 Expanded protein information at SGD: new pages and proteome browser.
• 2006 Saccharomyces cerevisiae S288C genome annotation: a working hypothesis.
• 2006 Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome.
• 2005 Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD).
• 2004 Saccharomyces genome database: underlying principles and organisation.
• 2004 Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms.
• 2003 Saccharomyces Genome Database (SGD) provides biochemical and structural information for budding yeast proteins.
• 2002 Saccharomyces Genome Database.
• 2002 Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO).
• 2001 Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data.
• 2000 Integrating functional genomic information into the Saccharomyces genome database.
• 2009 Using Model Organism Databases (MODs)

The metaregistry provides mappings between the Bioregistry and other registries. There are 11 mappings to external registries for sgd with 6 unique external prefixes.

Providers are various services that resolve CURIEs to URLs. The example CURIE sgd:S000002493 is used to demonstrate the provides available for sgd. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Additional providers curated in the Bioregistry are listed here.