The Molecular Modeling Database (MMDB) is a database of experimentally determined structures obtained from the Protein Data Bank (PDB). Since structures are known for a large fraction of all protein families, structure homologs may facilitate inference of biological function, or the identification of binding or catalytic sites.

dna interaction protein small molecule structure
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Molecular Modeling Database should match this regular expression:

Example Local Unique Identifier
50885   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Molecular Modeling Database should match this regular expression:

Example CURIE
2006 MMDB: annotating protein sequences with Entrez's 3D-structure database.
Metaregistry Molecular Modeling Database

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for mmdb with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext MMDB
EDAM Ontology edam 2667 logo miriam mmdb
Name-to-Thing Name-to-Thing logo n2t mmdb
Prefix Commons prefixcommons mmdb

Providers are various services that resolve CURIEs to URLs. The example CURIE mmdb:50885 is used to demonstrate the provides available for mmdb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Molecular Modeling Database mmdb
Bioregistry bioregistry miriam
Name-to-Thing n2t