The Molecular Modeling Database (MMDB) is a database of experimentally determined structures obtained from the Protein Data Bank (PDB). Since structures are known for a large fraction of all protein families, structure homologs may facilitate inference of biological function, or the identification of binding or catalytic sites.

dna interaction protein small molecule structure
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Molecular Modeling Database should match this regular expression:

Example Local Unique Identifier
50885   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Molecular Modeling Database should match this regular expression:

Example CURIE
2006 MMDB: annotating protein sequences with Entrez's 3D-structure database
Metaregistry Molecular Modeling Database

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext MMDB
EDAM EDAM Ontology logo edam 2667 logo miriam mmdb
N2T Name-to-Thing logo n2t mmdb
Pathguide Pathguide logo pathguide 508
Prefix Commons Prefix Commons logo prefixcommons mmdb

Providers are various services that resolve CURIEs to URLs. The example CURIE mmdb:50885 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Molecular Modeling Database mmdb
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
bio2rdf Bio2RDF