Registry Structural Classification of Protein
The SCOP (Structural Classification of Protein) database is a comprehensive ordering of all proteins of known structure according to their evolutionary, functional and structural relationships. The basic classification unit is the protein domain. Domains are hierarchically classified into species, proteins, families, superfamilies, folds, and classes.
- Prefix
scop- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in Structural Classification of Protein should match this regular expression:
^\d+$ - Example Local Unique Identifier
- 47419 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Structural Classification of Protein should match this regular expression:
^scop:\d+$ - Example CURIE
- scop:47419
Metaregistry Structural Classification of Protein
The metaregistry provides mappings between the Bioregistry and other registries. There are
5 mappings to external registries for scop with
2 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
SCOP
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.wjzty
|
|
Identifiers.org
|
miriam |
scop
|
|
Name-to-Thing
|
n2t |
scop
|
|
| Prefix Commons | prefixcommons |
scop
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
scop:47419
is used to demonstrate the provides available for
scop. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| Structural Classification of Protein | scop |
http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sunid=47419 |
| Bioregistry | bioregistry |
https://bioregistry.io/scop:47419 |
| Identifiers.org | miriam |
https://identifiers.org/scop:47419 |
| Name-to-Thing | n2t |
https://n2t.net/scop:47419 |
| None | CURATOR_REVIEW |
http://scop.berkeley.edu/sunid=47419 |
Extra Providers
Additional providers curated in the Bioregistry are listed here.
| Code | Name | URL |
|---|---|---|
CURATOR_REVIEW |
SCOP at Berkeley | http://scop.berkeley.edu/sunid=47419 |