The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules.

Prefix
pdb
Alternative Prefixes
wwpdb pdbe
Links
Homepage
Contact
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Pattern for Local Unique Identifiers

Local identifiers in PDB structure ID should match this regular expression:
^[0-9][A-Za-z0-9]{3}$

Example Local Unique Identifier
2gc4   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from PDB structure ID should match this regular expression:
^pdb:[0-9][A-Za-z0-9]{3}$

Example CURIE
pdb:2gc4
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for pdb.

Registry Name Metaprefix External Prefix
FAIRSharing fairsharing FAIRsharing.2t35ja
Gene Ontology Registry go PDB
Identifiers.org miriam pdb
Name-to-Thing n2t pdb
National Center for Biotechnology Information Registry ncbi PDB
Prefix Commons prefixcommons PDB
UniProt Cross-ref database uniprot PDB
Wikidata Property wikidata P638
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE pdb:2gc4 is used to demonstrate the provides available for pdb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
PDB structure ID pdb https://www.rcsb.org/structure/2gc4
Bioregistry bioregistry https://bioregistry.io/pdb:2gc4
Identifiers.org miriam https://identifiers.org/pdb:2gc4
Name-to-Thing n2t https://n2t.net/pdb:2gc4
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
CURATOR_REVIEW Proteopedia http://proteopedia.org/wiki/index.php/2gc4
ebi Protein Databank through PDBsum https://www.ebi.ac.uk/pdbsum/2gc4