Registry PDB Structure
The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules.
- Prefix
pdb- Alternative Prefixes
- wwpdb pdbj pdbe RCSB_PDB
- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in PDB Structure should match this regular expression:
^[0-9][A-Za-z0-9]{3}$ - Example Local Unique Identifier
- 2gc4 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from PDB Structure should match this regular expression:
^pdb:[0-9][A-Za-z0-9]{3}$ - Example CURIE
- pdb:2gc4
Metaregistry
The metaregistry provides mappings between the Bioregistry and other registries. There are
8 mappings to external registries for pdb.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
FAIRSharing
|
fairsharing |
FAIRsharing.mckkb4
|
| Gene Ontology Registry | go |
PDB
|
Identifiers.org
|
miriam |
pdb
|
Name-to-Thing
|
n2t |
pdb
|
| National Center for Biotechnology Information Registry | ncbi |
PDB
|
| Prefix Commons | prefixcommons |
PDB
|
| UniProt Cross-ref database | uniprot |
RCSB-PDB
|
Wikidata Property
|
wikidata |
P638
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
pdb:2gc4 is used to demonstrate the provides available for
pdb. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| PDB Structure | pdb |
https://www.wwpdb.org/pdb?id=2gc4 |
| Bioregistry | bioregistry |
https://bioregistry.io/pdb:2gc4 |
| Identifiers.org | miriam |
https://identifiers.org/pdb:2gc4 |
| Name-to-Thing | n2t |
https://n2t.net/pdb:2gc4 |
Extra Providers
Additional providers curated in the Bioregistry are listed here.
| Code | Name | URL |
|---|---|---|
| CURATOR_REVIEW | Proteopedia | http://proteopedia.org/wiki/index.php/2gc4 |
| ebi | Protein Databank through PDBsum | https://www.ebi.ac.uk/pdbsum/2gc4 |
| rcsb | RCSB PDB | https://www.rcsb.org/structure/2gc4 |
| pdbj | Protein Data Bank Japan (PDBj) | https://pdbj.org/mine/summary/2gc4 |
| pdbe | Protein Databank in Europe (PDBe) | https://www.ebi.ac.uk/pdbe/entry/pdb/2gc4 |