The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules.

Alternative Prefixes
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Haruki Nakamura   0000-0001-6690-5863
Pattern for Local Unique Identifiers

Local identifiers in PDB Structure should match this regular expression:

Example Local Unique Identifier
2gc4   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from PDB Structure should match this regular expression:

Example CURIE
Metaregistry PDB Structure

The metaregistry provides mappings between the Bioregistry and other registries. There are 11 mappings to external registries for this resource with 7 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext PDB
EDAM EDAM Ontology logo edam 1127
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.rs2815
GO Gene Ontology Registry logo go PDB logo miriam pdb
N2T Name-to-Thing logo n2t pdb
NCBI National Center for Biotechnology Information Registry logo ncbi PDB
Prefix Commons Prefix Commons logo prefixcommons pdbj
re3data Registry of Research Data Repositories logo re3data r3d100010910
UniProt UniProt Cross-ref database logo uniprot DB-0172
Wikidata Wikidata Property logo wikidata P638
RDF Information

When using this resource in RDF, the following URI format should be used:$1


Providers are various services that resolve CURIEs to URLs. The example CURIE None:2gc4 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
PDB Structure pdb
PDB Structure (RDF) rdf
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
bio2rdf Bio2RDF
ebi Protein Databank through PDBsum
pdbe Protein Databank in Europe (PDBe)
pdbj Protein Data Bank Japan (PDBj)