The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules.
pdb
Local identifiers in PDB structure ID should match this
regular expression:
^[0-9][A-Za-z0-9]{3}$
Compact URIs (CURIEs) constructed from PDB structure ID should match
this regular expression:
^pdb:[0-9][A-Za-z0-9]{3}$
The metaregistry provides mappings between the Bioregistry and other registries. There are
8 mappings to external registries for pdb.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
| FAIRSharing | fairsharing |
FAIRsharing.2t35ja
|
| Gene Ontology Registry | go |
PDB
|
| Identifiers.org | miriam |
pdb
|
| Name-to-Thing | n2t |
pdb
|
| National Center for Biotechnology Information Registry | ncbi |
PDB
|
| Prefix Commons | prefixcommons |
PDB
|
| UniProt Cross-ref database | uniprot |
PDB
|
| Wikidata Property | wikidata |
P638
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
pdb:2gc4 is used to demonstrate the provides available for
pdb. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| PDB structure ID | pdb |
https://www.rcsb.org/structure/2gc4 |
| Bioregistry | bioregistry |
https://bioregistry.io/pdb:2gc4 |
| Identifiers.org | miriam |
https://identifiers.org/pdb:2gc4 |
| Name-to-Thing | n2t |
https://n2t.net/pdb:2gc4 |
Additional providers curated in the Bioregistry are listed here.
| Code | Name | URL |
|---|---|---|
| CURATOR_REVIEW | Proteopedia | http://proteopedia.org/wiki/index.php/2gc4 |
| ebi | Protein Databank through PDBsum | https://www.ebi.ac.uk/pdbsum/2gc4 |