ProtClustDB is a collection of related protein sequences (clusters) consisting of Reference Sequence proteins encoded by complete genomes. This database contains both curated and non-curated clusters.

Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in ProtClustDB should match this regular expression:

Example Local Unique Identifier
O80725   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from ProtClustDB should match this regular expression:

Example CURIE
2008 The National Center for Biotechnology Information's Protein Clusters Database.
Metaregistry ProtClustDB

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for protclustdb with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext PROTCLUSTDB
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.da493y logo miriam protclustdb
Name-to-Thing Name-to-Thing logo n2t protclustdb
Prefix Commons prefixcommons protclustdb

Providers are various services that resolve CURIEs to URLs. The example CURIE protclustdb:O80725 is used to demonstrate the provides available for protclustdb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
ProtClustDB protclustdb
Bioregistry bioregistry miriam
Name-to-Thing n2t