ProtClustDB is a collection of related protein sequences (clusters) consisting of Reference Sequence proteins encoded by complete genomes. This database contains both curated and non-curated clusters.

Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in ProtClustDB should match this regular expression:

Example Local Unique Identifier
O80725   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from ProtClustDB should match this regular expression:

Example CURIE
Metaregistry ProtClustDB

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for protclustdb with 2 unique external prefixes.

Registry Name Metaprefix External Prefix
BioContext biocontext PROTCLUSTDB
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.da493y logo miriam protclustdb
Name-to-Thing Name-to-Thing logo n2t protclustdb
Prefix Commons prefixcommons protclustdb

Providers are various services that resolve CURIEs to URLs. The example CURIE protclustdb: is used to demonstrate the provides available for protclustdb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
ProtClustDB protclustdb
Bioregistry bioregistry miriam
Name-to-Thing n2t