ProtClustDB is a collection of related protein sequences (clusters) consisting of Reference Sequence proteins encoded by complete genomes. This database contains both curated and non-curated clusters.

Prefix
protclustdb
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in ProtClustDB should match this regular expression:
^\w+$

Example Local Unique Identifier
O80725   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from ProtClustDB should match this regular expression:
^protclustdb:\w+$

Example CURIE
protclustdb:O80725
Publications
2008 The National Center for Biotechnology Information's Protein Clusters Database.
Metaregistry ProtClustDB

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for protclustdb with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext PROTCLUSTDB
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.da493y
Identifiers.org Identifiers.org logo miriam protclustdb
Name-to-Thing Name-to-Thing logo n2t protclustdb
Prefix Commons prefixcommons protclustdb
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE protclustdb:O80725 is used to demonstrate the provides available for protclustdb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
ProtClustDB protclustdb https://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term=O80725
Bioregistry bioregistry https://bioregistry.io/protclustdb:O80725
Identifiers.org miriam https://identifiers.org/protclustdb:O80725
Name-to-Thing n2t https://n2t.net/protclustdb:O80725