Collections

Collections are curated lists of prefixes along with a description of what the list is for. For example, there's a collection that lists all of the resources from the review article Sharing biological data: why, when, and how. There's also a collection comprising semantic web prefixes.

New collections can be added in one of the following ways:

Name Size Description
Resources mentioned in "Sharing biological data: why, when, and how" 18

These resources were listed in Sharing biological data: why, when, and how, which prompted further novel curation of the Bioregistry which included the addition of GenBank, Panorama Public, EMPIAR, and SSBD. It also prompted the curation of mappings to FAIRSharing when possible.

Semantic Web Context 28

Resources used in the semantic web, inspired by this list in BioContext.

ChEBI Data Sources 24

The data sources used in xrefs in the ChEBI ontology. More information in the "Data Sources" section of this document.

International Classifications of Diseases 7

This collection contains the many prefixes for the different repackaging of the International Classification of Diseases (ICD) throughout its major revisions.

Allen Institute Ontologies 5

This collection contains various brain atlases from the Allen Institute.

SPAR Ontologies 13

The Semantic Publishing and Referencing (SPAR) Ontologies are a suite of orthogonal and complementary OWL 2 ontologies that enable all aspects of the publishing process to be described in machine-readable metadata statements, encoded using RDF.

Publication Provenance Prefixes 4

Prefixes useful in annotating documentation provenance.

ASKEM Epidemiology Prefixes 18

Prefixes exported for the epidemiology domain knowledge graph in the ASKEM project.

FHIR External Terminologies 37

Prefixes mentioned on the external list on the FHIR Code Systems page. This list is mostly complete. Notably, some entries that have not been curated:

  • HGVS (see discussion at #460)
  • NUBC (National Uniform Billing Committee) - could not find information about the terminology or its entries
  • ICPC (International Classification of Primary Care) same
  • GTIN (Global Trade Item Number) same
  • MDC (Medical Device Codes) since that appears to be part of a larger ISO standard vocabulary that needs further investigation