The NCBI BioSystems database centralizes and cross-links existing biological systems databases, increasing their utility and target audience by integrating their pathways and systems into NCBI resources.
biosystems
Local identifiers in BioSystems should match this
regular expression:
^\d+$
Compact URIs (CURIEs) constructed from BioSystems should match
this regular expression:
^biosystems:\d+$
The metaregistry provides mappings between the Bioregistry and other registries. There are
6 mappings to external registries for biosystems
with
3 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
BIOSYSTEMS
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.w2eeqr
|
|
Identifiers.org
![]() |
miriam |
biosystems
|
|
N2T
![]() |
n2t |
biosystems
|
|
Prefix Commons
|
prefixcommons |
biosystems
|
|
re3data
![]() |
re3data |
r3d100011033
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
biosystems:001
is used to demonstrate the provides available for
biosystems
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
BioSystems | biosystems |
https://www.ncbi.nlm.nih.gov/biosystems/001 |
Bioregistry | bioregistry |
https://bioregistry.io/biosystems:001 |
Identifiers.org | miriam |
https://identifiers.org/biosystems:001 |
Name-to-Thing | n2t |
https://n2t.net/biosystems:001 |
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/biosystems:001 |