IntAct provides a freely available, open source database system and analysis tools for protein interaction data.
- Prefix
intact- Keywords
- interaction interaction/pathway metabolite protein protein-protein interaction databases psi-mi repository
- License
- CC-BY-4.0
- Links
- Homepage
- Publications
- 2024 IntAct Database for Accessing IMEx's Contextual Metadata of Molecular Interactions
- 2013 The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases
- https://bioregistry.io/pubmed:22121220
- 2011 PSICQUIC and PSISCORE: accessing and scoring molecular interactions
- 2009 The IntAct molecular interaction database in 2010
- 2007 Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions
- 2004 IntAct: an open source molecular interaction database
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in IntAct protein interaction should match this regular expression:
^EBI\-[0-9]+$ - Example Local Unique Identifier
- EBI-2307691 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from IntAct protein interaction should match this regular expression:
^intact:EBI\-[0-9]+$ - Example CURIE
- intact:EBI-2307691
Contacts
- Contact
-
Kalpana Panneerselvam
0000-0003-2534-198X
Kalpanapanneerselvam
-
Juan Jose Medina Reyes
0009-0004-6468-260X
jmedinaebi
- Identifier Space Owner
-
European Bioinformatics Institute
- Contributors
-
contributor
Sucharitha Balu
0000-0001-7456-0594
CP-SB
Ontology
A summary of the relations in the Bioregistry schema can be found here.
- In Collection (1)
- Synapse.org external links
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 10 mappings to external registries with 5 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
INTACT
|
|
GO
|
go |
IntAct
|
|
Integbio
|
integbio |
nbdc00507
|
|
Identifiers.org
|
miriam |
intact
|
|
N2T
|
n2t |
intact
|
|
Pathguide
|
pathguide |
111
|
|
Prefix Commons
|
prefixcommons |
intact
|
|
re3data
|
re3data |
r3d100010671
|
|
| TogoID | togoid |
Intact
|
|
UniProt
|
uniprot |
DB-0051
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier EBI-2307691 is used to demonstrate the providers
available for IntAct protein interaction. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| IntAct protein interaction | intact |
https://www.ebi.ac.uk/intact/interaction/EBI-2307691 |
| Bioregistry | bioregistry |
https://bioregistry.io/intact:EBI-2307691 |
| Identifiers.org | miriam |
https://identifiers.org/intact:EBI-2307691 |
| Name-to-Thing | n2t |
https://n2t.net/intact:EBI-2307691 |
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| Bio2RDF | bio2rdf |
http://bio2rdf.org/intact:EBI-2307691 |