ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons.

Alternative Prefixes
gene genome life science
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Aclame should match this regular expression:

Example Local Unique Identifier
2   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Aclame should match this regular expression:

Example CURIE
MIRIAM Namespace Embedded in LUI
The legacy MIRIAM standard for generating CURIEs with this resource annotates the namespaceEmbeddedInLUI as true. This means that you may see local unique identifiers that include a redundant prefix and delimiter (also known as a banana) and therefore look like a CURIE. For Aclame, the banana looks like mge:. Therefore, you may see local unique identifiers for this resource that look like mge:2 (instead of the canonical form 2) and CURIEs for this resource that look like mge:mge:2 (instead of the canonical form mge:2). The Bioregistry will automatically strip off the banana when standardizing local unique identifiers and CURIEs.
Metaregistry Aclame

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 5 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext ACLAME
EDAM EDAM Ontology logo edam 2631
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.5tfcy8
Integbio Integbio logo integbio nbdc00355 logo miriam mge
N2T Name-to-Thing logo n2t mge
Prefix Commons Prefix Commons logo prefixcommons aclame

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 2 is used to demonstrate the providers available for Aclame. A guide for curating additional providers can be found here.

Name Metaprefix URI
Aclame mge
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF