ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons.

Prefix

mge

Alternative Prefixes

aclame

Keywords

gene genome life science

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in Aclame should match this regular expression:
^\d+$

Example Local Unique Identifier

2   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Aclame should match this regular expression:
^mge:\d+$

Example CURIE

mge:2

MIRIAM Namespace Embedded in LUI

The legacy MIRIAM standard for generating CURIEs with this resource includes the namespaceEmbeddedInLUI as true. The actual part that gets prefixed before the local unique identifier regex, otherwise known as the banana, is mge:. Therefore, you might see local unique identifiers written out as CURIEs.

Publications

• 2009 ACLAME: a CLAssification of Mobile genetic Elements, update 2010.
• 2004 ACLAME: a CLAssification of Mobile genetic Elements.

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for mge with 4 unique external prefixes.

Providers are various services that resolve CURIEs to URLs. The example CURIE mge:2 is used to demonstrate the provides available for mge. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.