Registry CATH Protein Structural Domain Superfamily

CATH is a classification of protein structural domains. We group protein domains into superfamilies when there is sufficient evidence they have diverged from a common ancestor. CATH can be used to predict structural and functional information directly from protein sequence.

Prefix
cath
Keywords
biology classification evolutionary biology protein structure
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in CATH Protein Structural Domain Superfamily should match this regular expression:
^[1-6]\.[0-9]+\.[0-9]+\.[0-9]+$

Example Local Unique Identifier
1.10.8.10   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from CATH Protein Structural Domain Superfamily should match this regular expression:
^cath:[1-6]\.[0-9]+\.[0-9]+\.[0-9]+$

Example CURIE
cath:1.10.8.10
Publications
Ontology

A summary of the relations in the Bioregistry schema can be found here.

Has Parts (bfo:0000051 )
cath.superfamily
Metaregistry CATH Protein Structural Domain Superfamily

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 4 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext CATH
EDAM EDAM Ontology logo edam 2700
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.xgcyyn
Identifiers.org Identifiers.org logo miriam cath
N2T Name-to-Thing logo n2t cath
Prefix Commons Prefix Commons logo prefixcommons cath
re3data Registry of Research Data Repositories logo re3data r3d100012629
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 1.10.8.10 is used to demonstrate the providers available for CATH Protein Structural Domain Superfamily. A guide for curating additional providers can be found here.

Name Metaprefix URI
CATH Protein Structural Domain Superfamily cath http://www.cathdb.info/cathnode/1.10.8.10
Bioregistry bioregistry https://bioregistry.io/cath:1.10.8.10
Identifiers.org miriam https://identifiers.org/cath:1.10.8.10
Name-to-Thing n2t https://n2t.net/cath:1.10.8.10
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/cath:1.10.8.10