PepBank is a database of peptides based on sequence text mining and public peptide data sources. Only peptides that are 20 amino acids or shorter are stored. Only peptides with available sequences are stored.
Identifier Standards
- Pattern for Local Unique Identifiers
- Missing LUI pattern
- Example Local Unique Identifier
- 21877 Resolve
- Example CURIE
- pepbank:21877
Contacts
- Contact
- Missing Contact
- Reviewer
-
Charles Tapley Hoyt
0000-0003-4423-4370
cthoyt
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 2 mappings to external registries with 2 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
Pathguide
|
pathguide |
235
|
|
Prefix Commons
|
prefixcommons |
pepbank
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier 21877 is used to demonstrate the providers
available for PepBank Peptide Database. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| PepBank Peptide Database | pepbank |
http://pepbank.mgh.harvard.edu/interactions/details/21877 |
| Bioregistry | bioregistry |
https://bioregistry.io/pepbank:21877 |
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| Bio2RDF | bio2rdf |
http://bio2rdf.org/pepbank:21877 |