Registry Human Metabolome Database

The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body.It contains or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data.

Prefix
hmdb
Alternative Prefixes
HMDB
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Human Metabolome Database should match this regular expression:
^HMDB\d+$

Example Local Unique Identifier
HMDB00001   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Human Metabolome Database should match this regular expression:
^hmdb:HMDB\d+$

Example CURIE
hmdb:HMDB00001
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for hmdb.

Registry Name Metaprefix External Prefix
Identifiers.org miriam hmdb
Name-to-Thing n2t hmdb
Prefix Commons prefixcommons HMDB
Wikidata Property wikidata P2057
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE hmdb:HMDB00001 is used to demonstrate the provides available for hmdb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Human Metabolome Database hmdb http://www.hmdb.ca/metabolites/HMDB00001
Bioregistry bioregistry https://bioregistry.io/hmdb:HMDB00001
Identifiers.org miriam https://identifiers.org/hmdb:HMDB00001
Name-to-Thing n2t https://n2t.net/hmdb:HMDB00001