Registry Human Metabolome Database
The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body.It contains or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data.
- Prefix
hmdb- Alternative Prefixes
- HMDB
- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in Human Metabolome Database should match this regular expression:
^HMDB\d+$ - Example Local Unique Identifier
- HMDB00001 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Human Metabolome Database should match this regular expression:
^hmdb:HMDB\d+$ - Example CURIE
- hmdb:HMDB00001
- Publications
- 2007 HMDB: the Human Metabolome Database.
Metaregistry Human Metabolome Database
The metaregistry provides mappings between the Bioregistry and other registries. There are
8 mappings to external registries for hmdb with
5 unique external prefixes.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
| BioContext | biocontext |
HMDB
|
| Chemical Information Ontology | cheminf |
000408
|
| EDAM Ontology | edam |
2622
|
FAIRSharing
|
fairsharing |
FAIRsharing.sye5js
|
Identifiers.org
|
miriam |
hmdb
|
Name-to-Thing
|
n2t |
hmdb
|
| Prefix Commons | prefixcommons |
hmdb
|
Wikidata Property
|
wikidata |
P2057
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
hmdb:HMDB00001
is used to demonstrate the provides available for
hmdb. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| Human Metabolome Database | hmdb |
http://www.hmdb.ca/metabolites/HMDB00001 |
| Bioregistry | bioregistry |
https://bioregistry.io/hmdb:HMDB00001 |
| Identifiers.org | miriam |
https://identifiers.org/hmdb:HMDB00001 |
| Name-to-Thing | n2t |
https://n2t.net/hmdb:HMDB00001 |