The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body.It contains or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data.
hmdb
Local identifiers in Human Metabolome Database should match this
regular expression:
^HMDB\d+$
Compact URIs (CURIEs) constructed from Human Metabolome Database should match
this regular expression:
^hmdb:HMDB\d+$
The metaregistry provides mappings between the Bioregistry and other registries. There are 9 mappings to external registries for this resource with 6 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
HMDB
|
|
CHEMINF | cheminf |
000408
|
|
EDAM
|
edam |
2622
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.sye5js
|
|
Identifiers.org
![]() |
miriam |
hmdb
|
|
N2T
![]() |
n2t |
hmdb
|
|
Prefix Commons
|
prefixcommons |
hmdb
|
|
re3data
![]() |
re3data |
r3d100011285
|
|
Wikidata
|
wikidata |
P2057
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
None:HMDB00001
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
Human Metabolome Database | hmdb |
http://www.hmdb.ca/metabolites/HMDB00001 |
Bioregistry | bioregistry |
https://bioregistry.io/hmdb:HMDB00001 |
Identifiers.org | miriam |
https://identifiers.org/hmdb:HMDB00001 |
Name-to-Thing | n2t |
https://n2t.net/hmdb:HMDB00001 |
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/hmdb:HMDB00001 |