Registry Small Molecule Pathway Database

The Small Molecule Pathway Database (SMPDB) contains small molecule pathways found in humans, which are presented visually. All SMPDB pathways include information on the relevant organs, subcellular compartments, protein cofactors, protein locations, metabolite locations, chemical structures and protein quaternary structures. Accompanying data includes detailed descriptions and references, providing an overview of the pathway, condition or processes depicted in each diagram.

Alternative Prefixes
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Small Molecule Pathway Database should match this regular expression:

Example Local Unique Identifier
SMP0000219   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Small Molecule Pathway Database should match this regular expression:

Example CURIE
Metaregistry Small Molecule Pathway Database

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for smpdb.

Registry Name Metaprefix External Prefix
BioContext biocontext SMPDB
Biolink Model Registry biolink PathWhiz
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.y1zyaq logo miriam smpdb
Name-to-Thing Name-to-Thing logo n2t smpdb
Prefix Commons prefixcommons smpdb

Providers are various services that resolve CURIEs to URLs. The example CURIE smpdb: is used to demonstrate the provides available for smpdb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Small Molecule Pathway Database smpdb
Bioregistry bioregistry miriam
Name-to-Thing n2t