The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The CCDS set is calculated following coordinated whole genome annotation updates carried out by the NCBI, WTSI, and Ensembl. The long term goal is to support convergence towards a standard set of gene annotations.

gene life science protein
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Consensus CDS should match this regular expression:

Example Local Unique Identifier
CCDS13573.1   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Consensus CDS should match this regular expression:

Example CURIE
Metaregistry Consensus CDS

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for this resource with 4 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext CCDS
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.46s4nt
Integbio Integbio logo integbio nbdc00023 logo miriam ccds
N2T Name-to-Thing logo n2t ccds
Prefix Commons Prefix Commons logo prefixcommons ccds
TogoID togoid Ccds
UniProt UniProt Cross-ref database logo uniprot DB-0187

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier CCDS13573.1 is used to demonstrate the providers available for Consensus CDS. A guide for curating additional providers can be found here.

Name Metaprefix URI
Consensus CDS ccds
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF