The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The CCDS set is calculated following coordinated whole genome annotation updates carried out by the NCBI, WTSI, and Ensembl. The long term goal is to support convergence towards a standard set of gene annotations.

gene life science protein
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Consensus CDS should match this regular expression:

Example Local Unique Identifier
CCDS13573.1   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Consensus CDS should match this regular expression:

Example CURIE
2009 The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes
Metaregistry Consensus CDS

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext CCDS
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.46s4nt logo miriam ccds
N2T Name-to-Thing logo n2t ccds
Prefix Commons Prefix Commons logo prefixcommons ccds
UniProt UniProt Cross-ref database logo uniprot DB-0187

Providers are various services that resolve CURIEs to URLs. The example CURIE None:CCDS13573.1 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Consensus CDS ccds
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
bio2rdf Bio2RDF