GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the "Pathogen Genomics" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed.

genome life science sequence
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in GeneDB should match this regular expression:

Example Local Unique Identifier
LinJ.20.0070   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from GeneDB should match this regular expression:

Example CURIE
2004 GeneDB: a resource for prokaryotic and eukaryotic organisms.
Metaregistry GeneDB

The metaregistry provides mappings between the Bioregistry and other registries. There are 10 mappings to external registries for genedb with 5 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext GENEDB
EDAM Ontology edam 1035
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.j7esqq
Gene Ontology Registry go GeneDB logo miriam genedb
Name-to-Thing Name-to-Thing logo n2t genedb
National Center for Biotechnology Information Registry ncbi GeneDB
Prefix Commons prefixcommons genedb
Registry of Research Data Repositories re3data r3d100010626
Wikidata Property Wikidata Property logo wikidata P3382

Providers are various services that resolve CURIEs to URLs. The example CURIE genedb:LinJ.20.0070 is used to demonstrate the provides available for genedb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
GeneDB genedb
Bioregistry bioregistry miriam
Name-to-Thing n2t