GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the "Pathogen Genomics" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed.
genedb
Local identifiers in GeneDB should match this
regular expression:
^[\w\d\.-]*$
Compact URIs (CURIEs) constructed from GeneDB should match
this regular expression:
^genedb:[\w\d\.-]*$
The metaregistry provides mappings between the Bioregistry and other registries. There are
10 mappings to external registries for genedb
with
5 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
GENEDB
|
|
EDAM
|
edam |
1035
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.j7esqq
|
|
GO
![]() |
go |
GeneDB
|
|
Identifiers.org
![]() |
miriam |
genedb
|
|
N2T
![]() |
n2t |
genedb
|
|
NCBI
|
ncbi |
GeneDB
|
|
Prefix Commons
|
prefixcommons |
genedb
|
|
re3data
![]() |
re3data |
r3d100010626
|
|
Wikidata
|
wikidata |
P3382
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
genedb:LinJ.20.0070
is used to demonstrate the provides available for
genedb
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
GeneDB | genedb |
https://www.genedb.org/gene/LinJ.20.0070 |
Bioregistry | bioregistry |
https://bioregistry.io/genedb:LinJ.20.0070 |
Identifiers.org | miriam |
https://identifiers.org/genedb:LinJ.20.0070 |
Name-to-Thing | n2t |
https://n2t.net/genedb:LinJ.20.0070 |
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/genedb:LinJ.20.0070 |