GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the "Pathogen Genomics" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed.

Prefix

genedb

Keywords

genome life science sequence

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in GeneDB should match this regular expression:
^[\w\d\.-]*$

Example Local Unique Identifier

LinJ.20.0070   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from GeneDB should match this regular expression:
^genedb:[\w\d\.-]*$

Example CURIE

genedb:LinJ.20.0070

Publications

2004 GeneDB: a resource for prokaryotic and eukaryotic organisms.

The metaregistry provides mappings between the Bioregistry and other registries. There are 10 mappings to external registries for genedb with 5 unique external prefixes.

Providers are various services that resolve CURIEs to URLs. The example CURIE genedb:LinJ.20.0070 is used to demonstrate the provides available for genedb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.