GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the "Pathogen Genomics" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed.

Prefix
genedb
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in GeneDB should match this regular expression:
^[\w\d\.-]*$

Example Local Unique Identifier
LinJ.20.0070   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from GeneDB should match this regular expression:
^genedb:[\w\d\.-]*$

Example CURIE
genedb:LinJ.20.0070
Publications
2004 GeneDB: a resource for prokaryotic and eukaryotic organisms.
Metaregistry GeneDB

The metaregistry provides mappings between the Bioregistry and other registries. There are 11 mappings to external registries for genedb with 5 unique external prefixes.

Registry Name Metaprefix External Prefix
BioContext biocontext GENEDB
EDAM Ontology edam 1035
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.j7esqq
Gene Ontology Registry go GeneDB
Identifiers.org Identifiers.org logo miriam genedb
Name-to-Thing Name-to-Thing logo n2t genedb
National Center for Biotechnology Information Registry ncbi GeneDB
Prefix Commons prefixcommons genedb
Registry of Research Data Repositories re3data r3d100010626
UniProt Cross-ref database uniprot GeneDB
Wikidata Property Wikidata Property logo wikidata P3382
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE genedb:LinJ.20.0070 is used to demonstrate the provides available for genedb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
GeneDB genedb https://www.genedb.org/gene/LinJ.20.0070
Bioregistry bioregistry https://bioregistry.io/genedb:LinJ.20.0070
Identifiers.org miriam https://identifiers.org/genedb:LinJ.20.0070
Name-to-Thing n2t https://n2t.net/genedb:LinJ.20.0070