GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the "Pathogen Genomics" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed.

genome life science sequence
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in GeneDB should match this regular expression:

Example Local Unique Identifier
LinJ.20.0070   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from GeneDB should match this regular expression:

Example CURIE
2004 GeneDB: a resource for prokaryotic and eukaryotic organisms
Metaregistry GeneDB

The metaregistry provides mappings between the Bioregistry and other registries. There are 11 mappings to external registries for this resource with 6 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext GENEDB
EDAM EDAM Ontology logo edam 1035
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.j7esqq
GO Gene Ontology Registry logo go GeneDB
Integbio Integbio logo integbio nbdc00469 logo miriam genedb
N2T Name-to-Thing logo n2t genedb
NCBI National Center for Biotechnology Information Registry logo ncbi GeneDB
Prefix Commons Prefix Commons logo prefixcommons genedb
re3data Registry of Research Data Repositories logo re3data r3d100010626
Wikidata Wikidata Property logo wikidata P3382

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier LinJ.20.0070 is used to demonstrate the providers available for GeneDB. A guide for curating additional providers can be found here.

Name Metaprefix URI
GeneDB genedb
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF