Registry GeneDB Deprecated
GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the "Pathogen Genomics" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed.
- Prefix
genedb- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in GeneDB should match this regular expression:
^[\w\d\.-]*$ - Example Local Unique Identifier
- LinJ.20.0070 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from GeneDB should match this regular expression:
^genedb:[\w\d\.-]*$ - Example CURIE
- genedb:LinJ.20.0070
Metaregistry GeneDB
The metaregistry provides mappings between the Bioregistry and other registries. There are
8 mappings to external registries for genedb.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
FAIRSharing
|
fairsharing |
FAIRsharing.j7esqq
|
| Gene Ontology Registry | go |
GeneDB
|
Identifiers.org
|
miriam |
genedb
|
Name-to-Thing
|
n2t |
genedb
|
| National Center for Biotechnology Information Registry | ncbi |
GeneDB
|
| Prefix Commons | prefixcommons |
GENEDB
|
| UniProt Cross-ref database | uniprot |
GeneDB
|
Wikidata Property
|
wikidata |
P3382
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
genedb:LinJ.20.0070 is used to demonstrate the provides available for
genedb. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| GeneDB | genedb |
https://www.genedb.org/gene/LinJ.20.0070 |
| Bioregistry | bioregistry |
https://bioregistry.io/genedb:LinJ.20.0070 |
| Identifiers.org | miriam |
https://identifiers.org/genedb:LinJ.20.0070 |
| Name-to-Thing | n2t |
https://n2t.net/genedb:LinJ.20.0070 |