GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the "Pathogen Genomics" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed.
genedb
Local identifiers in GeneDB ID should match this
regular expression:
^[\w\d\.-]*$
Compact URIs (CURIEs) constructed from GeneDB ID should match
this regular expression:
^genedb:[\w\d\.-]*$
The metaregistry provides mappings between the Bioregistry and other registries. There are
7 mappings to external registries for genedb.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
| Gene Ontology Registry | go |
GeneDB
|
| Identifiers.org | miriam |
genedb
|
| Name-to-Thing | n2t |
genedb
|
| National Center for Biotechnology Information Registry | ncbi |
GeneDB
|
| Prefix Commons | prefixcommons |
GENEDB
|
| UniProt Cross-ref database | uniprot |
GeneDB
|
| Wikidata Property | wikidata |
P3382
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
genedb:LinJ.20.0070 is used to demonstrate the provides available for
genedb. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| GeneDB ID | genedb |
https://www.genedb.org/gene/LinJ.20.0070 |
| Bioregistry | bioregistry |
https://bioregistry.io/genedb:LinJ.20.0070 |
| Identifiers.org | miriam |
https://identifiers.org/genedb:LinJ.20.0070 |
| Name-to-Thing | n2t |
https://n2t.net/genedb:LinJ.20.0070 |