iRefWeb is an interface to a relational database containing the latest build of the interaction Reference Index (iRefIndex) which integrates protein interaction data from ten different interaction databases: BioGRID, BIND, CORUM, DIP, HPRD, INTACT, MINT, MPPI, MPACT and OPHID. In addition, iRefWeb associates interactions with the PubMed record from which they are derived.

interaction life science protein
Shoshana J. Wodak   0000-0002-0701-6545
Pattern for Local Unique Identifiers

Local identifiers in iRefWeb should match this regular expression:

Example Local Unique Identifier
617102   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from iRefWeb should match this regular expression:

Example CURIE
2010 iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence
Metaregistry iRefWeb

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 4 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext IREFWEB
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.t31wcb logo miriam irefweb
N2T Name-to-Thing logo n2t irefweb
Pathguide Pathguide logo pathguide 300
Prefix Commons Prefix Commons logo prefixcommons irefweb
re3data Registry of Research Data Repositories logo re3data r3d100012725

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 617102 is used to demonstrate the providers available for iRefWeb. A guide for curating additional providers can be found here.

Name Metaprefix URI
iRefWeb irefweb
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF