The UniProt Archive (UniParc) is a database containing non-redundant protein sequence information from many sources. Each unique sequence is given a stable and unique identifier (UPI) making it possible to identify the same protein from different source databases.
- Prefix
uniparc- Keywords
- protein structure
- Links
- Homepage
- Publications
- 2004 UniProt: the Universal Protein knowledgebase
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local unique identifiers in UniParc should match this
regular expression:
^UPI[A-F0-9]{10}$ - Example Local Unique Identifier
- UPI000000000A Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from UniParc should match
this regular expression:
^uniparc:UPI[A-F0-9]{10}$ - Example CURIE
- uniparc:UPI000000000A
Contacts
- Contact
-
Alex Bateman
0000-0002-6982-4660
bateman-research
- Group Contact
- Mailing List
- Identifier Space Owner
-
The Uniprot Consortium
Ontology
A summary of the relations in the Bioregistry schema can be found here.
- In Collection (1)
- Synapse.org external links
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 8 mappings to external registries with 3 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
UNIPARC
|
|
EDAM
|
edam |
2392
|
|
GO
|
go |
UniParc
|
|
Identifiers.org
|
miriam |
uniparc
|
|
N2T
|
n2t |
uniparc
|
|
Prefix Commons
|
prefixcommons |
uniparc
|
|
re3data
|
re3data |
r3d100011519
|
|
| TogoID | togoid |
Uniparc
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier UPI000000000A is used to demonstrate the providers
available for UniParc. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| UniParc | uniparc |
https://www.uniprot.org/uniparc/UPI000000000A |
| Bioregistry | bioregistry |
https://bioregistry.io/uniparc:UPI000000000A |
| Identifiers.org | miriam |
https://identifiers.org/uniparc:UPI000000000A |
| Name-to-Thing | n2t |
https://n2t.net/uniparc:UPI000000000A |
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| Bio2RDF | bio2rdf |
http://bio2rdf.org/uniparc:UPI000000000A |