BioCyc is a collection of Pathway/Genome Databases (PGDBs) which provides an electronic reference source on the genomes and metabolic pathways of sequenced organisms.
biocyc
Local identifiers in BioCyc collection of metabolic pathway databases should match this
regular expression:
^[A-Z-0-9]+(\:)?[A-Za-z0-9+_.%-:]+$
Compact URIs (CURIEs) constructed from BioCyc collection of metabolic pathway databases should match
this regular expression:
^biocyc:[A-Z-0-9]+(\:)?[A-Za-z0-9+_.%-:]+$
The metaregistry provides mappings between the Bioregistry and other registries. There are
7 mappings to external registries for biocyc
with
3 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
BIOCYC
|
|
EDAM Ontology | edam |
2104
|
|
Gene Ontology Registry | go |
BioCyc
|
|
Identifiers.org
![]() |
miriam |
biocyc
|
|
Name-to-Thing
![]() |
n2t |
biocyc
|
|
Prefix Commons | prefixcommons |
biocyc
|
|
UniProt Cross-ref database | uniprot |
DB-0005
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
biocyc:ECOLI:CYT-D-UBIOX-CPLX
is used to demonstrate the provides available for
biocyc
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.