Registry BioCyc collection of metabolic pathway databases

BioCyc is a collection of Pathway/Genome Databases (PGDBs) which provides an electronic reference source on the genomes and metabolic pathways of sequenced organisms.

Prefix
biocyc
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in BioCyc collection of metabolic pathway databases should match this regular expression:
^[A-Z-0-9]+(\:)?[A-Za-z0-9+_.%-:]+$

Example Local Unique Identifier
ECOLI:CYT-D-UBIOX-CPLX   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from BioCyc collection of metabolic pathway databases should match this regular expression:
^biocyc:[A-Z-0-9]+(\:)?[A-Za-z0-9+_.%-:]+$

Example CURIE
biocyc:ECOLI:CYT-D-UBIOX-CPLX
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for biocyc.

Registry Name Metaprefix External Prefix
Gene Ontology Registry go BioCyc
Identifiers.org miriam biocyc
Name-to-Thing n2t biocyc
Prefix Commons prefixcommons BIOCYC
UniProt Cross-ref database uniprot BioCyc
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE biocyc:ECOLI:CYT-D-UBIOX-CPLX is used to demonstrate the provides available for biocyc. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
BioCyc collection of metabolic pathway databases biocyc http://biocyc.org/getid?id=ECOLI:CYT-D-UBIOX-CPLX
Bioregistry bioregistry https://bioregistry.io/biocyc:ECOLI:CYT-D-UBIOX-CPLX
Identifiers.org miriam https://identifiers.org/biocyc:ECOLI:CYT-D-UBIOX-CPLX
Name-to-Thing n2t https://n2t.net/biocyc:ECOLI:CYT-D-UBIOX-CPLX