Registry BioCyc collection of metabolic pathway databases
BioCyc is a collection of Pathway/Genome Databases (PGDBs) which provides an electronic reference source on the genomes and metabolic pathways of sequenced organisms.
- Prefix
biocyc- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in BioCyc collection of metabolic pathway databases should match this regular expression:
^[A-Z-0-9]+(\:)?[A-Za-z0-9+_.%-:]+$ - Example Local Unique Identifier
- ECOLI:CYT-D-UBIOX-CPLX Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from BioCyc collection of metabolic pathway databases should match this regular expression:
^biocyc:[A-Z-0-9]+(\:)?[A-Za-z0-9+_.%-:]+$ - Example CURIE
- biocyc:ECOLI:CYT-D-UBIOX-CPLX
- Publications
- 2005 Expansion of the BioCyc collection of pathway/genome databases to 160 genomes.
Metaregistry BioCyc collection of metabolic pathway databases
The metaregistry provides mappings between the Bioregistry and other registries. There are
7 mappings to external registries for biocyc with
2 unique external prefixes.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
| BioContext | biocontext |
BIOCYC
|
| EDAM Ontology | edam |
2104
|
| Gene Ontology Registry | go |
BioCyc
|
Identifiers.org
|
miriam |
biocyc
|
Name-to-Thing
|
n2t |
biocyc
|
| Prefix Commons | prefixcommons |
biocyc
|
| UniProt Cross-ref database | uniprot |
BioCyc
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
biocyc:ECOLI:CYT-D-UBIOX-CPLX
is used to demonstrate the provides available for
biocyc. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.