The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans' various diseases and biological processes (usually through miRs' respective target genes).

Prefix

omit

Preferred Prefix

OMIT

Alternative Prefixes

OMIT

Keywords

annotation biology cell gene gene prediction life science mirna molecular entity molecular interaction obo ontology prediction and recognition protein regulation of gene expression

Version

dev

License

CC-BY-3.0

Links

Homepage Repository OBO OWL

Contact

Jingshan Huang   0000-0003-2408-2883   Huang-OMIT

Pattern for Local Unique Identifiers

Local identifiers in Ontology for MicroRNA Target should match this regular expression:
^\d{7}$

Example Local Unique Identifier

0000069   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Ontology for MicroRNA Target should match this regular expression:
^OMIT:\d{7}$

Example CURIE

OMIT:0000069

Publications

• 2016 OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data
• 2014 OMIT: dynamic, semi-automated ontology development for the microRNA domain
• 2011 OMIT: a domain-specific knowledge base for microRNA target prediction

A summary of the relations in the Bioregistry schema can be found here.

Appears In (1) (bioregistry.schema:0000018 )

MCO

The metaregistry provides mappings between the Bioregistry and other registries. There are 9 mappings to external registries for this resource with 2 unique external prefixes.

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/OMIT_$1

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0000069 is used to demonstrate the providers available for Ontology for MicroRNA Target. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.