The Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution.

Prefix
cdd
Keywords
earth science geology protein structure
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Conserved Domain Database at NCBI should match this regular expression:
^(cd)?\d{5}$

Example Local Unique Identifier
cd00400   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Conserved Domain Database at NCBI should match this regular expression:
^cdd:(cd)?\d{5}$

Example CURIE
cdd:cd00400
Publications
Metaregistry Conserved Domain Database at NCBI

The metaregistry provides mappings between the Bioregistry and other registries. There are 11 mappings to external registries for this resource with 6 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext CDD
EDAM EDAM Ontology logo edam 2666
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.ea287c
GO Gene Ontology Registry logo go CDD
Integbio Integbio logo integbio nbdc00401
Identifiers.org Identifiers.org logo miriam cdd
N2T Name-to-Thing logo n2t cdd
NCBI National Center for Biotechnology Information Registry logo ncbi CDD
Prefix Commons Prefix Commons logo prefixcommons cdd
re3data Registry of Research Data Repositories logo re3data r3d100012041
UniProt UniProt Cross-ref database logo uniprot DB-0214
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier cd00400 is used to demonstrate the providers available for Conserved Domain Database at NCBI. A guide for curating additional providers can be found here.

Name Metaprefix URI
Conserved Domain Database at NCBI cdd https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00400
Bioregistry bioregistry https://bioregistry.io/cdd:cd00400
Identifiers.org miriam https://identifiers.org/cdd:cd00400
Name-to-Thing n2t https://n2t.net/cdd:cd00400
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/cdd:cd00400