The Protein Model DataBase (PMDB), is a database that collects manually built three dimensional protein models, obtained by different structure prediction techniques.

protein structural biology structure
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Protein Model Database should match this regular expression:

Example Local Unique Identifier
PM0012345   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Protein Model Database should match this regular expression:

Example CURIE
2006 The PMDB Protein Model Database
Metaregistry Protein Model Database

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext PMDB
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.wkaakq logo miriam pmdb
N2T Name-to-Thing logo n2t pmdb
Prefix Commons Prefix Commons logo prefixcommons pmdb

Providers are various services that resolve CURIEs to URLs. The example CURIE pmdb:PM0012345 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Protein Model Database pmdb
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
bio2rdf Bio2RDF