TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins.

Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in TIGR protein families should match this regular expression:

Example Local Unique Identifier
TIGR00010   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from TIGR protein families should match this regular expression:

Example CURIE
Metaregistry TIGR protein families

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext TIGRFAM
EDAM EDAM Ontology logo edam 1141
Identifiers.org Identifiers.org logo miriam tigrfam
N2T Name-to-Thing logo n2t tigrfam
NCBI National Center for Biotechnology Information Registry logo ncbi TIGRFAM
Prefix Commons Prefix Commons logo prefixcommons tigrfams

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier TIGR00010 is used to demonstrate the providers available for TIGR protein families. A guide for curating additional providers can be found here.

Name Metaprefix URI
TIGR protein families tigrfam https://www.ncbi.nlm.nih.gov/cdd?term=TIGR00010
Bioregistry bioregistry https://bioregistry.io/tigrfam:TIGR00010
Identifiers.org miriam https://identifiers.org/tigrfam:TIGR00010
Name-to-Thing n2t https://n2t.net/tigrfam:TIGR00010
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/tigrfams:TIGR00010