TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins.
tigrfam
Local identifiers in TIGR protein families should match this
regular expression:
^TIGR\d+$
Compact URIs (CURIEs) constructed from TIGR protein families should match
this regular expression:
^tigrfam:TIGR\d+$
The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 3 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
TIGRFAM
|
|
EDAM | edam |
1141
|
|
Identifiers.org | miriam |
tigrfam
|
|
N2T | n2t |
tigrfam
|
|
NCBI | ncbi |
TIGRFAM
|
|
Prefix Commons | prefixcommons |
tigrfams
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
tigrfam:TIGR00010
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
TIGR protein families | tigrfam |
https://www.ncbi.nlm.nih.gov/cdd?term=TIGR00010 |
Bioregistry | bioregistry |
https://bioregistry.io/tigrfam:TIGR00010 |
Identifiers.org | miriam |
https://identifiers.org/tigrfam:TIGR00010 |
Name-to-Thing | n2t |
https://n2t.net/tigrfam:TIGR00010 |
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/tigrfams:TIGR00010 |