OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references individual protein records.

Prefix
oma.protein
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in OMA Protein should match this regular expression:
^[A-Z0-9]{5}\d+$

Example Local Unique Identifier
HUMAN16963   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from OMA Protein should match this regular expression:
^oma.protein:[A-Z0-9]{5}\d+$

Example CURIE
oma.protein:HUMAN16963
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for oma.protein.

Registry Name Metaprefix External Prefix
Identifiers.org miriam oma.protein
Name-to-Thing n2t oma.protein
Prefix Commons prefixcommons OMA.PROTEIN
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE oma.protein:HUMAN16963 is used to demonstrate the provides available for oma.protein. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
OMA Protein oma.protein https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1=HUMAN16963
Bioregistry bioregistry https://bioregistry.io/oma.protein:HUMAN16963
Identifiers.org miriam https://identifiers.org/oma.protein:HUMAN16963
Name-to-Thing n2t https://n2t.net/oma.protein:HUMAN16963