Registry Database of homology-derived secondary structure of proteins
HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein.
- Prefix
hssp- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in Database of homology-derived secondary structure of proteins should match this regular expression:
^\w{4}$ - Example Local Unique Identifier
- 102l Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Database of homology-derived secondary structure of proteins should match this regular expression:
^hssp:\w{4}$ - Example CURIE
- hssp:102l
Metaregistry Database of homology-derived secondary structure of proteins
The metaregistry provides mappings between the Bioregistry and other registries. There are
5 mappings to external registries for hssp.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
| BioContext | biocontext |
HSSP
|
Identifiers.org
|
miriam |
hssp
|
Name-to-Thing
|
n2t |
hssp
|
| National Center for Biotechnology Information Registry | ncbi |
HSSP
|
| Prefix Commons | prefixcommons |
hssp
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
hssp:102l is used to demonstrate the provides available for
hssp. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Extra Providers
Additional providers curated in the Bioregistry are listed here.
| Code | Name | URL |
|---|---|---|
| CURATOR_REVIEW | HSSP at CMBI | ftp://ftp.cmbi.ru.nl/pub/molbio/data/hssp/102l.hssp.bz2 |