HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein.

Prefix

hssp

Keywords

clustering protein sequence

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in Database of homology-derived secondary structure of proteins should match this regular expression:
^\w{4}$

Example Local Unique Identifier

102l   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Database of homology-derived secondary structure of proteins should match this regular expression:
^hssp:\w{4}$

Example CURIE

hssp:102l

Publications

• 1996 The HSSP database of protein structure-sequence alignments.
• 1994 The HSSP database of protein structure-sequence alignments.

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for hssp with 1 unique external prefixes.

Providers are various services that resolve CURIEs to URLs. The example CURIE hssp:102l is used to demonstrate the provides available for hssp. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Additional providers curated in the Bioregistry are listed here.