Registry Database of homology-derived secondary structure of proteins

HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein.

Prefix
hssp
Keywords
clustering protein sequence
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Database of homology-derived secondary structure of proteins should match this regular expression:
^\w{4}$

Example Local Unique Identifier
102l   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Database of homology-derived secondary structure of proteins should match this regular expression:
^hssp:\w{4}$

Example CURIE
hssp:102l
Publications
Metaregistry Database of homology-derived secondary structure of proteins

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for hssp with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext HSSP
Identifiers.org Identifiers.org logo miriam hssp
N2T Name-to-Thing logo n2t hssp
NCBI National Center for Biotechnology Information Registry logo ncbi HSSP
Prefix Commons Prefix Commons logo prefixcommons hssp
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE hssp:102l is used to demonstrate the provides available for hssp. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Database of homology-derived secondary structure of proteins hssp ftp://ftp.embl-heidelberg.de/pub/databases/protein_extras/hssp/102l.hssp.bz2
Bioregistry bioregistry https://bioregistry.io/hssp:102l
Identifiers.org miriam https://identifiers.org/hssp:102l
Name-to-Thing n2t https://n2t.net/hssp:102l
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
CURATOR_REVIEW HSSP at CMBI ftp://ftp.cmbi.ru.nl/pub/molbio/data/hssp/102l.hssp.bz2
bio2rdf Bio2RDF http://bio2rdf.org/hssp:102l