HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein.
hssp
Local identifiers in Database of homology-derived secondary structure of proteins should match this
regular expression:
^\w{4}$
Compact URIs (CURIEs) constructed from Database of homology-derived secondary structure of proteins should match
this regular expression:
^hssp:\w{4}$
The metaregistry provides mappings between the Bioregistry and other registries. There are
5 mappings to external registries for hssp
with
1 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
HSSP
|
|
Identifiers.org
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miriam |
hssp
|
|
Name-to-Thing
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n2t |
hssp
|
|
National Center for Biotechnology Information Registry | ncbi |
HSSP
|
|
Prefix Commons | prefixcommons |
hssp
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
hssp:102l
is used to demonstrate the provides available for
hssp
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
CURATOR_REVIEW |
HSSP at CMBI | ftp://ftp.cmbi.ru.nl/pub/molbio/data/hssp/102l.hssp.bz2 |