Registry AmoebaDB
AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.
- Prefix
amoebadb- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in AmoebaDB should match this regular expression:
^EDI_\d+$ - Example Local Unique Identifier
- EDI_244000 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from AmoebaDB should match this regular expression:
^amoebadb:EDI_\d+$ - Example CURIE
- amoebadb:EDI_244000
Metaregistry
The metaregistry provides mappings between the Bioregistry and other registries. There are
4 mappings to external registries for amoebadb.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
FAIRSharing
|
fairsharing |
FAIRsharing.swbypy
|
Identifiers.org
|
miriam |
amoebadb
|
Name-to-Thing
|
n2t |
amoebadb
|
| Prefix Commons | prefixcommons |
AMOEBADB
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
amoebadb:EDI_244000 is used to demonstrate the provides available for
amoebadb. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| AmoebaDB | amoebadb |
https://amoebadb.org/amoeba/app/record/gene/EDI_244000 |
| Bioregistry | bioregistry |
https://bioregistry.io/amoebadb:EDI_244000 |
| Identifiers.org | miriam |
https://identifiers.org/amoebadb:EDI_244000 |
| Name-to-Thing | n2t |
https://n2t.net/amoebadb:EDI_244000 |