AmoebaDB is one of the databases that can be accessed through the EuPathDB (; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.

functional genomics genomics model organism
Homepage @eupathdb
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in AmoebaDB should match this regular expression:

Example Local Unique Identifier
EDI_244000   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from AmoebaDB should match this regular expression:

Example CURIE
2009 EuPathDB: a portal to eukaryotic pathogen databases
Metaregistry AmoebaDB

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext AMOEBADB
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.swbypy logo miriam amoebadb
N2T Name-to-Thing logo n2t amoebadb
Prefix Commons Prefix Commons logo prefixcommons amoebadb
re3data Registry of Research Data Repositories logo re3data r3d100012457

Providers are various services that resolve CURIEs to URLs. The example CURIE amoebadb:EDI_244000 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
AmoebaDB amoebadb
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
bio2rdf Bio2RDF