AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.
amoebadb
Local identifiers in AmoebaDB should match this
regular expression:
^EDI_\d+$
Compact URIs (CURIEs) constructed from AmoebaDB should match
this regular expression:
^amoebadb:EDI_\d+$
The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 3 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
AMOEBADB
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.swbypy
|
|
Identifiers.org
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miriam |
amoebadb
|
|
N2T
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n2t |
amoebadb
|
|
Prefix Commons
|
prefixcommons |
amoebadb
|
|
re3data
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re3data |
r3d100012457
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
amoebadb:EDI_244000
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
AmoebaDB | amoebadb |
https://amoebadb.org/amoeba/app/record/gene/EDI_244000 |
Bioregistry | bioregistry |
https://bioregistry.io/amoebadb:EDI_244000 |
Identifiers.org | miriam |
https://identifiers.org/amoebadb:EDI_244000 |
Name-to-Thing | n2t |
https://n2t.net/amoebadb:EDI_244000 |
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/amoebadb:EDI_244000 |