AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.

Prefix

amoebadb

Keywords

functional genomics genomics model organism

Links

Homepage @eupathdb

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in AmoebaDB should match this regular expression:
^EDI_\d+$

Example Local Unique Identifier

EDI_244000   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from AmoebaDB should match this regular expression:
^amoebadb:EDI_\d+$

Example CURIE

amoebadb:EDI_244000

Publications

2009 EuPathDB: a portal to eukaryotic pathogen databases.

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for amoebadb with 3 unique external prefixes.

Providers are various services that resolve CURIEs to URLs. The example CURIE amoebadb:EDI_244000 is used to demonstrate the provides available for amoebadb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.