The Proteomics Standards Initiative modification ontology (PSI-MOD) aims to define a concensus nomenclature and ontology reconciling, in a hierarchical representation, the complementary descriptions of residue modifications.
mod
MOD
Local identifiers in Protein modification should match this
regular expression:
^\d{5}$
Compact URIs (CURIEs) constructed from Protein modification should match
this regular expression:
^MOD:\d{5}$
namespaceEmbeddedInLUI
as true.
This means that you may see local unique identifiers that include a redundant prefix and delimiter (also known
as a banana)
and therefore look like a CURIE. For Protein modification, the banana looks like
MOD:
.
Therefore, you may see local unique identifiers for this resource that look like
MOD:01467
(instead of the canonical form 01467
) and CURIEs for this resource that look like
MOD:MOD:01467
(instead of the canonical form MOD:01467
).
The Bioregistry will automatically strip off the banana when standardizing local unique identifiers and CURIEs.
The metaregistry provides mappings between the Bioregistry and other registries. There are 11 mappings to external registries for this resource with 5 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
AberOWL
![]() |
aberowl |
PSIMOD
|
|
BioContext | biocontext |
MOD
|
|
BioPortal
![]() |
bioportal |
PSIMOD
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.2m4ms9
|
|
GO
![]() |
go |
PSI-MOD
|
|
Identifiers.org
![]() |
miriam |
mod
|
|
N2T
![]() |
n2t |
mod
|
|
OBO Foundry
![]() |
obofoundry |
mod
|
|
OLS
![]() |
ols |
mod
|
|
OntoBee
![]() |
ontobee |
MOD
|
|
Prefix Commons
|
prefixcommons |
psi.mod
|
When using this resource in RDF, the following URI format should be used:
http://purl.obolibrary.org/obo/MOD_$1
Providers are various services that resolve CURIEs to URLs. The example CURIE
MOD:01467
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/psi.mod:01467 |