The Proteomics Standards Initiative modification ontology (PSI-MOD) aims to define a concensus nomenclature and ontology reconciling, in a hierarchical representation, the complementary descriptions of residue modifications.
mod
MOD
Local identifiers in Protein modification should match this
regular expression:
^\d{5}$
Compact URIs (CURIEs) constructed from Protein modification should match
this regular expression:
^mod:\d{5}$
namespaceEmbeddedInLUI
as true. The actual
part that gets prefixed before the local unique identifier regex,
otherwise known as the banana, is
MOD:
.
Therefore, you might see local unique identifiers written out as CURIEs.
The metaregistry provides mappings between the Bioregistry and other registries. There are
11 mappings to external registries for mod
with
5 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
AberOWL | aberowl |
PSIMOD
|
|
BioContext | biocontext |
MOD
|
|
BioPortal Prefixes | bioportal |
PSIMOD
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.2m4ms9
|
|
Gene Ontology Registry | go |
PSI-MOD
|
|
Identifiers.org
![]() |
miriam |
mod
|
|
Name-to-Thing
![]() |
n2t |
mod
|
|
OBO Foundry
![]() |
obofoundry |
mod
|
|
Ontology Lookup Service
![]() |
ols |
mod
|
|
OntoBee | ontobee |
MOD
|
|
Prefix Commons | prefixcommons |
psi.mod
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
mod:01467
is used to demonstrate the provides available for
mod
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.