SubtiList serves to collate and integrate various aspects of the genomic information from B. subtilis, the paradigm of sporulating Gram-positive bacteria. SubtiList provides a complete dataset of DNA and protein sequences derived from the paradigm strain B. subtilis 168, linked to the relevant annotations and functional assignments.
- Prefix
subtilist- Keywords
- dna genome protein
- Links
- Homepage
- Publications
- 2002 SubtiList: the reference database for the Bacillus subtilis genome
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in SubtiList should match this regular expression:
^BG\d+$ - Example Local Unique Identifier
- BG11523 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from SubtiList should match this regular expression:
^subtilist:BG\d+$ - Example CURIE
- subtilist:BG11523
Contacts
- Contact
-
Antoine Danchin
0000-0002-6350-5001
- Identifier Space Owner
-
Pasteur Institute, Paris
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 5 mappings to external registries with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
SUBTILIST
|
|
Identifiers.org
|
miriam |
subtilist
|
|
N2T
|
n2t |
subtilist
|
|
NCBI
|
ncbi |
SubtiList
|
|
Prefix Commons
|
prefixcommons |
subtilist
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier BG11523 is used to demonstrate the providers
available for SubtiList. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| SubtiList | subtilist |
http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+BG11523 |
| Bioregistry | bioregistry |
https://bioregistry.io/subtilist:BG11523 |
| Identifiers.org | miriam |
https://identifiers.org/subtilist:BG11523 |
| Name-to-Thing | n2t |
https://n2t.net/subtilist:BG11523 |
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| Bio2RDF | bio2rdf |
http://bio2rdf.org/subtilist:BG11523 |