HOGENOM is a database of homologous genes from fully sequenced organisms (bacteria, archeae and eukarya). This collection references phylogenetic trees which can be retrieved using either UniProt accession numbers, or HOGENOM tree family identifier.

Prefix

hogenom

Keywords

classification life science phylogenetics phylogeny sequence

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in Database of Complete Genome Homologous Genes Families should match this regular expression:
^\w+$

Example Local Unique Identifier

HBG284870   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Database of Complete Genome Homologous Genes Families should match this regular expression:
^hogenom:\w+$

Example CURIE

hogenom:HBG284870

Publications

• 2009 Databases of homologous gene families for comparative genomics.
• 2000 HOBACGEN: database system for comparative genomics in bacteria.

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for hogenom with 3 unique external prefixes.

Providers are various services that resolve CURIEs to URLs. The example CURIE hogenom:HBG284870 is used to demonstrate the provides available for hogenom. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Additional providers curated in the Bioregistry are listed here.