HOGENOM is a database of homologous genes from fully sequenced organisms (bacteria, archeae and eukarya). This collection references phylogenetic trees which can be retrieved using either UniProt accession numbers, or HOGENOM tree family identifier.

Prefix

hogenom

Keywords

classification life science phylogenetics phylogeny sequence

Links

Homepage

Contact

Guy Perrière   0000-0002-6850-6265

Pattern for Local Unique Identifiers

Local identifiers in Database of Complete Genome Homologous Genes Families should match this regular expression:
^\w+$

Example Local Unique Identifier

HBG284870   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Database of Complete Genome Homologous Genes Families should match this regular expression:
^hogenom:\w+$

Example CURIE

hogenom:HBG284870

Publications

• 2009 Databases of homologous gene families for comparative genomics
• 2000 HOBACGEN: database system for comparative genomics in bacteria
• Databases of homologous gene families for comparative genomics.

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 4 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier HBG284870 is used to demonstrate the providers available for Database of Complete Genome Homologous Genes Families. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.