Registry Electron Microscopy Data Bank

The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. The EMDB map distribution format follows the CCP4 definition, which is widely recognized by software packages used by the structural biology community.

Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Electron Microscopy Data Bank should match this regular expression:

Example Local Unique Identifier
EMD-1001   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Electron Microscopy Data Bank should match this regular expression:

Example CURIE
Metaregistry Electron Microscopy Data Bank

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for emdb with 3 unique external prefixes.

Registry Name Metaprefix External Prefix
BioContext biocontext EMDB
EDAM Ontology edam 1146
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.651n9j logo miriam emdb
Name-to-Thing Name-to-Thing logo n2t emdb

Providers are various services that resolve CURIEs to URLs. The example CURIE emdb:EMD-1001 is used to demonstrate the provides available for emdb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Electron Microscopy Data Bank emdb
Bioregistry bioregistry miriam
Name-to-Thing n2t