The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. The EMDB map distribution format follows the CCP4 definition, which is widely recognized by software packages used by the structural biology community.
emdb
Local identifiers in Electron Microscopy Data Bank should match this
regular expression:
^EMD-\d{4,5}$
Compact URIs (CURIEs) constructed from Electron Microscopy Data Bank should match
this regular expression:
^emdb:EMD-\d{4,5}$
The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 4 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
EMDB
|
|
EDAM
|
edam |
1146
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.651n9j
|
|
Identifiers.org
![]() |
miriam |
emdb
|
|
N2T
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n2t |
emdb
|
|
re3data
![]() |
re3data |
r3d100010562
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
emdb:EMD-1001
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
Electron Microscopy Data Bank | emdb |
https://www.ebi.ac.uk/pdbe/entry/emdb/EMD-1001 |
Bioregistry | bioregistry |
https://bioregistry.io/emdb:EMD-1001 |
Identifiers.org | miriam |
https://identifiers.org/emdb:EMD-1001 |
Name-to-Thing | n2t |
https://n2t.net/emdb:EMD-1001 |