Registry Electron Microscopy Data Bank

The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. The EMDB map distribution format follows the CCP4 definition, which is widely recognized by software packages used by the structural biology community.

Prefix
emdb
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Electron Microscopy Data Bank should match this regular expression:
^EMD-\d{4}$

Example Local Unique Identifier
EMD-1001   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Electron Microscopy Data Bank should match this regular expression:
^emdb:EMD-\d{4}$

Example CURIE
emdb:EMD-1001
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for emdb.

Registry Name Metaprefix External Prefix
FAIRSharing fairsharing FAIRsharing.651n9j
Identifiers.org miriam emdb
Name-to-Thing n2t emdb
Prefix Commons prefixcommons EMDB
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE emdb:EMD-1001 is used to demonstrate the provides available for emdb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Electron Microscopy Data Bank emdb https://www.ebi.ac.uk/pdbe/entry/emdb/EMD-1001
Bioregistry bioregistry https://bioregistry.io/emdb:EMD-1001
Identifiers.org miriam https://identifiers.org/emdb:EMD-1001
Name-to-Thing n2t https://n2t.net/emdb:EMD-1001