PathBank is an interactive, visual database containing more than 100 000 machine-readable pathways found in model organisms such as humans, mice, E. coli, yeast, and Arabidopsis thaliana.

animal genetics bioinformatics biology cell biology cheminformatics database management drug metabolism endocrinology genetics human genetics medical informatics metabolomics microbiology molecular biology molecular microbiology plant genetics proteomics systems biology transcriptomics
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in PathBank should match this regular expression:

Example Local Unique Identifier
SMP0000219   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from PathBank should match this regular expression:

Example CURIE
Metaregistry PathBank

The metaregistry provides mappings between the Bioregistry and other registries. There are 1 mappings to external registries for this resource with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.3xwMon

Providers are various services that resolve CURIEs to URLs. The example CURIE None:SMP0000219 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
PathBank pathbank
Bioregistry bioregistry