PathBank is an interactive, visual database containing more than 100 000 machine-readable pathways found in model organisms such as humans, mice, E. coli, yeast, and Arabidopsis thaliana.

Prefix
pathbank
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in PathBank should match this regular expression:
^(SMP|PW)\d+$

Example Local Unique Identifier
SMP0000219   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from PathBank should match this regular expression:
^pathbank:(SMP|PW)\d+$

Example CURIE
pathbank:SMP0000219
Contributor
Charles Tapley Hoyt
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE pathbank:SMP0000219 is used to demonstrate the provides available for pathbank. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
PathBank pathbank https://pathbank.org/view/SMP0000219
Bioregistry bioregistry https://bioregistry.io/pathbank:SMP0000219