Registry Reference Sequence Collection Has Canonical
The Reference Sequence (RefSeq) collection aims to provide a comprehensive, integrated, non-redundant set of sequences, including genomic DNA, transcript (RNA), and protein products.
- Prefix
refseq- Alternative Prefixes
- REFSEQ_PROT
- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in Reference Sequence Collection should match this regular expression:
^(((AC|AP|NC|NG|NM|NP|NR|NT|NW|XM|XP|XR|YP|ZP)_\d+)|(NZ\_[A-Z]{2,4}\d+))(\.\d+)?$ - Example Local Unique Identifier
- NP_012345 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Reference Sequence Collection should match this regular expression:
^refseq:(((AC|AP|NC|NG|NM|NP|NR|NT|NW|XM|XP|XR|YP|ZP)_\d+)|(NZ\_[A-Z]{2,4}\d+))(\.\d+)?$ - Example CURIE
- refseq:NP_012345
- References
-
- Publication https://bioregistry.io/pubmed:17130148
Metaregistry Reference Sequence Collection
The metaregistry provides mappings between the Bioregistry and other registries. There are
7 mappings to external registries for refseq.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
| BioContext | biocontext |
RefSeq
|
FAIRSharing
|
fairsharing |
FAIRsharing.4jg0qw
|
| Gene Ontology Registry | go |
RefSeq
|
Identifiers.org
|
miriam |
refseq
|
Name-to-Thing
|
n2t |
refseq
|
| Prefix Commons | prefixcommons |
refseq
|
| UniProt Cross-ref database | uniprot |
RefSeq
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
refseq:
is used to demonstrate the provides available for
refseq. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| Reference Sequence Collection | refseq |
https://www.ncbi.nlm.nih.gov/protein/NP_012345 |
| Bioregistry | bioregistry |
https://bioregistry.io/refseq:NP_012345 |
| Identifiers.org | miriam |
https://identifiers.org/refseq:NP_012345 |
| Name-to-Thing | n2t |
https://n2t.net/refseq:NP_012345 |