The Reference Sequence (RefSeq) collection aims to provide a comprehensive, integrated, non-redundant set of sequences, including genomic DNA, transcript (RNA), and protein products.
refseq
Local identifiers in Reference Sequence Collection should match this
regular expression:
^(((AC|AP|NC|NG|NM|NP|NR|NT|NW|XM|XP|XR|YP|ZP)_\d+)|(NZ\_[A-Z]{2,4}\d+))(\.\d+)?$
Compact URIs (CURIEs) constructed from Reference Sequence Collection should match
this regular expression:
^refseq:(((AC|AP|NC|NG|NM|NP|NR|NT|NW|XM|XP|XR|YP|ZP)_\d+)|(NZ\_[A-Z]{2,4}\d+))(\.\d+)?$
The metaregistry provides mappings between the Bioregistry and other registries. There are
7 mappings to external registries for refseq
.
Registry Name | Metaprefix | External Prefix |
---|---|---|
BioContext | biocontext |
RefSeq
|
FAIRSharing
|
fairsharing |
FAIRsharing.4jg0qw
|
Gene Ontology Registry | go |
RefSeq
|
Identifiers.org
![]() |
miriam |
refseq
|
Name-to-Thing
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n2t |
refseq
|
Prefix Commons | prefixcommons |
refseq
|
UniProt Cross-ref database | uniprot |
RefSeq
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
refseq:
is used to demonstrate the provides available for
refseq
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
Reference Sequence Collection | refseq |
https://www.ncbi.nlm.nih.gov/protein/NP_012345 |
Bioregistry | bioregistry |
https://bioregistry.io/refseq:NP_012345 |
Identifiers.org | miriam |
https://identifiers.org/refseq:NP_012345 |
Name-to-Thing | n2t |
https://n2t.net/refseq:NP_012345 |