Bioregistry - Protein Data Bank Ligand

Registry Protein Data Bank Ligand

The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules. This collection references ligands.

Prefix: pdb.ligand
Alternative Prefixes: PDB_CHEM_ID
Links: Homepage
Contact: Missing Contact
Pattern for Local Unique Identifiers: Local identifiers in Protein Data Bank Ligand should match this regular expression:
^[A-Za-z0-9]+$
Example Local Unique Identifier: TRQ Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from Protein Data Bank Ligand should match this regular expression:
^pdb.ligand:[A-Za-z0-9]+$
Example CURIE: pdb.ligand:TRQ

Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for pdb.ligand.

Registry Name	Metaprefix	External Prefix
Identifiers.org	`miriam`	`pdb.ligand`
Name-to-Thing	`n2t`	`pdb.ligand`
Prefix Commons	`prefixcommons`	`PDB.LIGAND`
Wikidata Property	`wikidata`	`P3636`

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE pdb.ligand:TRQ is used to demonstrate the provides available for pdb.ligand. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
Protein Data Bank Ligand	`pdb.ligand`	http://www.rcsb.org/pdb/ligand/ligandsummary.do?hetId=TRQ
Bioregistry	`bioregistry`	https://bioregistry.io/pdb.ligand:TRQ
Identifiers.org	`miriam`	https://identifiers.org/pdb.ligand:TRQ
Name-to-Thing	`n2t`	https://n2t.net/pdb.ligand:TRQ

Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code	Name	URL
CURATOR_REVIEW	PDB Ligand at Protein Databank in Europe (PDBe)	https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/TRQ