Registry Protein Data Bank Ligand
The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules. This collection references ligands.
- Prefix
pdb.ligand- Alternative Prefixes
- PDB_CHEM_ID
- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in Protein Data Bank Ligand should match this regular expression:
^[A-Za-z0-9]+$ - Example Local Unique Identifier
- TRQ Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Protein Data Bank Ligand should match this regular expression:
^pdb\.ligand:[A-Za-z0-9]+$ - Example CURIE
- pdb.ligand:TRQ
Metaregistry Protein Data Bank Ligand
The metaregistry provides mappings between the Bioregistry and other registries. There are
5 mappings to external registries for pdb.ligand with
3 unique external prefixes.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
| BioContext | biocontext |
PDB.LIGAND
|
Identifiers.org
|
miriam |
pdb.ligand
|
Name-to-Thing
|
n2t |
pdb.ligand
|
| Prefix Commons | prefixcommons |
pdbligand
|
Wikidata Property
|
wikidata |
P3636
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
pdb.ligand:TRQ
is used to demonstrate the provides available for
pdb.ligand. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| Protein Data Bank Ligand | pdb.ligand |
http://www.rcsb.org/pdb/ligand/ligandsummary.do?hetId=TRQ |
| Bioregistry | bioregistry |
https://bioregistry.io/pdb.ligand:TRQ |
| Identifiers.org | miriam |
https://identifiers.org/pdb.ligand:TRQ |
| Name-to-Thing | n2t |
https://n2t.net/pdb.ligand:TRQ |
| None | CURATOR_REVIEW |
https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/TRQ |
Extra Providers
Additional providers curated in the Bioregistry are listed here.
| Code | Name | URL |
|---|---|---|
CURATOR_REVIEW |
PDB Ligand at Protein Databank in Europe (PDBe) | https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/TRQ |