Registry Database of structurally defined protein interfaces

PIBASE is a collection of all protein structural interfaces extracted from the Protein Data Bank and PQS structure databases. Both chain-chain and domain-domain (SCOP and CATH definitions) interfaces are detected.

Prefix
pibase
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers
Missing LUI pattern
Example Local Unique Identifier
21692   Resolve
Pattern for CURIES
Could not construct CURIE pattern
Example CURIE
pibase:21692
Reviewer
Charles Tapley Hoyt   0000-0003-4423-4370   cthoyt
Metaregistry Database of structurally defined protein interfaces

The metaregistry provides mappings between the Bioregistry and other registries. There are 1 mappings to external registries for pibase with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
Prefix Commons prefixcommons pibase
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE pibase:21692 is used to demonstrate the provides available for pibase. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Database of structurally defined protein interfaces pibase http://modbase.compbio.ucsf.edu/pibase-cgi/get_details.pl?object_type=complexes&bdp_id=21692
Bioregistry bioregistry https://bioregistry.io/pibase:21692