The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism.
go
GO
Local identifiers in Gene Ontology should match this
regular expression:
^\d{7}$
Compact URIs (CURIEs) constructed from Gene Ontology should match
this regular expression:
^GO:\d{7}$
namespaceEmbeddedInLUI
as true. The actual
part that gets prefixed before the local unique identifier regex,
otherwise known as the banana, is GO:
.
Therefore, you might see local unique identifiers written out as CURIEs.
The metaregistry provides mappings between the Bioregistry and other registries. There are
12 mappings to external registries for go
.
Registry Name | Metaprefix | External Prefix |
---|---|---|
BioPortal Prefixes | bioportal |
GO
|
FAIRSharing
|
fairsharing |
FAIRsharing.6xq0ee
|
Gene Ontology Registry | go |
GO
|
Identifiers.org
![]() |
miriam |
go
|
Name-to-Thing
![]() |
n2t |
go
|
National Center for Biotechnology Information Registry | ncbi |
GO
|
OBO Foundry
![]() |
obofoundry |
GO
|
Ontology Lookup Service
![]() |
ols |
go
|
OntoBee | ontobee |
GO
|
Prefix Commons | prefixcommons |
GO
|
UniProt Cross-ref database | uniprot |
GO
|
Wikidata Property
|
wikidata |
P686
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
go:0032571
is used to demonstrate the provides available for
go
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
quickgo | QuickGO (Gene Ontology browser) | https://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0032571 |
CURATOR_REVIEW | GO Browser | http://www.informatics.jax.org/searches/GO.cgi?id=GO:0032571 |
CURATOR_REVIEW | GO through PANTHER | http://www.pantherdb.org/panther/category.do?categoryAcc=GO:0032571 |