The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism.
go
GO
Local identifiers in Gene Ontology should match this
regular expression:
^\d{7}$
Compact URIs (CURIEs) constructed from Gene Ontology should match
this regular expression:
^go:\d{7}$
namespaceEmbeddedInLUI
as true.
This means that you may see local unique identifiers that include a redundant prefix and delimiter (also known
as a banana)
and therefore look like a CURIE. For Gene Ontology, the banana looks like
GO:
.
Therefore, you may see local unique identifiers for this resource that look like
GO:0032571
(instead of the canonical form 0032571
) and CURIEs for this resource that look like
go:GO:0032571
(instead of the canonical form go:0032571
).
The Bioregistry will automatically strip off the banana when standardizing local unique identifiers and CURIEs.
The metaregistry provides mappings between the Bioregistry and other registries. There are
18 mappings to external registries for go
with
7 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
AberOWL
![]() |
aberowl |
GO
|
|
AgroPortal
|
agroportal |
GO
|
|
BARTOC
|
bartoc |
572
|
|
BioContext | biocontext |
GO
|
|
BioPortal
![]() |
bioportal |
GO
|
|
EDAM
|
edam |
1176
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.6xq0ee
|
|
GO
![]() |
go |
GO
|
|
HL7
![]() |
hl7 |
2.16.840.1.113883.6.128
|
|
Identifiers.org
![]() |
miriam |
go
|
|
N2T
![]() |
n2t |
go
|
|
NCBI
|
ncbi |
GO
|
|
OBO Foundry
![]() |
obofoundry |
go
|
|
OLS
![]() |
ols |
go
|
|
OntoBee
![]() |
ontobee |
GO
|
|
Prefix Commons
|
prefixcommons |
go
|
|
UniProt
|
uniprot |
DB-0037
|
|
Wikidata
|
wikidata |
P686
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
go:0032571
is used to demonstrate the provides available for
go
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
CURATOR_REVIEW |
GO Browser | http://www.informatics.jax.org/searches/GO.cgi?id=GO:0032571 |
CURATOR_REVIEW |
GO through PANTHER | http://www.pantherdb.org/panther/category.do?categoryAcc=GO:0032571 |
bio2rdf |
Bio2RDF | http://bio2rdf.org/go:0032571 |
go_site |
GO Site Link | http://www.geneontology.org/GO:0032571 |
jax |
Jackson Laboratories | http://www.informatics.jax.org/vocab/gene_ontology/GO:0032571 |
miriam_obo_legacy |
MIRIAM OBO Legacy | http://identifiers.org/obo.go/GO:0032571 |
nextprot |
neXtProt GO Browser | https://www.nextprot.org/term/GO:0032571 |
quickgo |
QuickGO (Gene Ontology browser) | https://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0032571 |