Registry High-quality Automated and Manual Annotation of microbial Proteomes

HAMAP is a system that identifies and semi-automatically annotates proteins that are part of well-conserved and orthologous microbial families or subfamilies. These are used to build rules which are used to propagate annotations to member bacterial, archaeal and plastid-encoded protein entries.

Prefix
hamap
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in High-quality Automated and Manual Annotation of microbial Proteomes should match this regular expression:
^MF_\d+$

Example Local Unique Identifier
MF_01400   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from High-quality Automated and Manual Annotation of microbial Proteomes should match this regular expression:
^hamap:MF_\d+$

Example CURIE
hamap:MF_01400
Publications
2014 HAMAP in 2015: updates to the protein family classification and annotation system.
Metaregistry High-quality Automated and Manual Annotation of microbial Proteomes

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for hamap with 4 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext HAMAP
EDAM Ontology edam 2766
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.63m4ss
Gene Ontology Registry go HAMAP
Identifiers.org Identifiers.org logo miriam hamap
Name-to-Thing Name-to-Thing logo n2t hamap
Prefix Commons prefixcommons hamap
UniProt Cross-ref database uniprot DB-0041
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE hamap:MF_01400 is used to demonstrate the provides available for hamap. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
High-quality Automated and Manual Annotation of microbial Proteomes hamap https://hamap.expasy.org/unirule/MF_01400
Bioregistry bioregistry https://bioregistry.io/hamap:MF_01400
Identifiers.org miriam https://identifiers.org/hamap:MF_01400
Name-to-Thing n2t https://n2t.net/hamap:MF_01400