Registry High-quality Automated and Manual Annotation of microbial Proteomes
HAMAP is a system that identifies and semi-automatically annotates proteins that are part of well-conserved and orthologous microbial families or subfamilies. These are used to build rules which are used to propagate annotations to member bacterial, archaeal and plastid-encoded protein entries.
- Prefix
hamap- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in High-quality Automated and Manual Annotation of microbial Proteomes should match this regular expression:
^MF_\d+$ - Example Local Unique Identifier
- MF_01400 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from High-quality Automated and Manual Annotation of microbial Proteomes should match this regular expression:
^hamap:MF_\d+$ - Example CURIE
- hamap:MF_01400
Metaregistry
The metaregistry provides mappings between the Bioregistry and other registries. There are
6 mappings to external registries for hamap.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
FAIRSharing
|
fairsharing |
FAIRsharing.63m4ss
|
| Gene Ontology Registry | go |
HAMAP
|
Identifiers.org
|
miriam |
hamap
|
Name-to-Thing
|
n2t |
hamap
|
| Prefix Commons | prefixcommons |
HAMAP
|
| UniProt Cross-ref database | uniprot |
HAMAP
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
hamap:MF_01400 is used to demonstrate the provides available for
hamap. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.